RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 BAG4O95429 457 aaKnown RBP24.67■■□□□ 1.54
VPS28-209ENST00000528142 PDE6AP16499 860 aa24.67■■□□□ 1.54
VPS28-209ENST00000528142 ME3Q16798 604 aa24.67■■□□□ 1.54
VPS28-209ENST00000528142 TCEANC2Q96MN5 208 aa24.67■■□□□ 1.54
VPS28-209ENST00000528142 WWC3Q9ULE0 1092 aa24.67■■□□□ 1.54
VPS28-209ENST00000528142 A0A0G2JLW4 131 aa24.66■■□□□ 1.54
VPS28-209ENST00000528142 WTIPA6NIX2 430 aaPredicted RBP24.66■■□□□ 1.54
VPS28-209ENST00000528142 GPAA1O43292 621 aa24.66■■□□□ 1.54
VPS28-209ENST00000528142 BRD1O95696 1058 aa24.66■■□□□ 1.54
VPS28-209ENST00000528142 ST3GAL1Q11201 340 aa24.66■■□□□ 1.54
VPS28-209ENST00000528142 ZNF532Q9HCE3 1301 aa24.66■■□□□ 1.54
VPS28-209ENST00000528142 DEFB132Q7Z7B7 95 aa24.65■■□□□ 1.54
VPS28-209ENST00000528142 CTNNA3Q9UI47 895 aa24.65■■□□□ 1.54
VPS28-209ENST00000528142 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.65■■□□□ 1.54
VPS28-209ENST00000528142 DEKP35659 375 aaKnown RBP24.65■■□□□ 1.54
VPS28-209ENST00000528142 TTLL5Q6EMB2 1281 aa24.65■■□□□ 1.54
VPS28-209ENST00000528142 ANO8Q9HCE9 1232 aaPredicted RBP24.65■■□□□ 1.54
VPS28-209ENST00000528142 TAF1P21675 1872 aa24.65■■□□□ 1.54
VPS28-209ENST00000528142 HMGB1P09429 215 aaKnown RBP24.64■■□□□ 1.54
VPS28-209ENST00000528142 HMGB2P26583 209 aaKnown RBP24.64■■□□□ 1.54
VPS28-209ENST00000528142 GSE1Q14687 1217 aa24.64■■□□□ 1.54
VPS28-209ENST00000528142 CNBD1Q8NA66 436 aa24.64■■□□□ 1.54
VPS28-209ENST00000528142 A0A1B0GUL6 1792 aa24.64■■□□□ 1.53
VPS28-209ENST00000528142 FGAP02671 866 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 COL23A1Q86Y22 540 aaPredicted RBP24.63■■□□□ 1.53
VPS28-209ENST00000528142 CCDC83Q8IWF9 413 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 TNRC6CQ9HCJ0 1690 aaKnown RBP24.63■■□□□ 1.53
VPS28-209ENST00000528142 E7EWF7 191 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 NPHP1O15259 732 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 TRAK2O60296 914 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 GYG1P46976 350 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 MAP3K12Q12852 859 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 PRR5LQ6MZQ0 368 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 TFCP2L1Q9NZI6 479 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 MYH7P12883 1935 aa24.63■■□□□ 1.53
VPS28-209ENST00000528142 ANKRD2Q9GZV1 360 aa24.62■■□□□ 1.53
VPS28-209ENST00000528142 EXOSC10Q01780 885 aaKnown RBP24.61■■□□□ 1.53
VPS28-209ENST00000528142 DHX32Q7L7V1 743 aaKnown RBP24.61■■□□□ 1.53
VPS28-209ENST00000528142 FAM84BQ96KN1 310 aaPredicted RBP24.61■■□□□ 1.53
VPS28-209ENST00000528142 PTMSP20962 102 aa24.61■■□□□ 1.53
VPS28-209ENST00000528142 GNL3LQ9NVN8 582 aaKnown RBP24.61■■□□□ 1.53
VPS28-209ENST00000528142 CAVIN4Q5BKX8 364 aa24.6■■□□□ 1.53
VPS28-209ENST00000528142 Q6ZUG5 572 aa24.6■■□□□ 1.53
VPS28-209ENST00000528142 FBXO33Q7Z6M2 555 aa24.6■■□□□ 1.53
VPS28-209ENST00000528142 MAGEB6Q8N7X4 407 aa24.6■■□□□ 1.53
VPS28-209ENST00000528142 NECAB1Q8N987 351 aa24.6■■□□□ 1.53
VPS28-209ENST00000528142 STRBPQ96SI9 672 aaKnown RBP24.6■■□□□ 1.53
VPS28-209ENST00000528142 SMC3Q9UQE7 1217 aa24.6■■□□□ 1.53
VPS28-209ENST00000528142 PNPLA7Q6ZV29 1317 aa24.6■■□□□ 1.53
VPS28-209ENST00000528142 SERPINB2P05120 415 aa24.59■■□□□ 1.53
VPS28-209ENST00000528142 IMMTQ16891 758 aaKnown RBP24.59■■□□□ 1.53
VPS28-209ENST00000528142 DOCK2Q92608 1830 aa24.59■■□□□ 1.53
VPS28-209ENST00000528142 GRAPQ13588 217 aa24.58■■□□□ 1.53
VPS28-209ENST00000528142 GRAPLQ8TC17 118 aaPredicted RBP24.58■■□□□ 1.53
VPS28-209ENST00000528142 MYO5AQ9Y4I1 1855 aaKnown RBP24.58■■□□□ 1.53
VPS28-209ENST00000528142 AGXT2Q9BYV1 514 aa24.58■■□□□ 1.53
VPS28-209ENST00000528142 IQSEC3Q9UPP2 1182 aaPredicted RBP24.58■■□□□ 1.53
VPS28-209ENST00000528142 COL1A1P02452 1464 aaPredicted RBP24.57■■□□□ 1.52
VPS28-209ENST00000528142 GOLGA6L22H0YM25 854 aa24.57■■□□□ 1.52
VPS28-209ENST00000528142 KLRK1P26718 216 aa24.57■■□□□ 1.52
VPS28-209ENST00000528142 CRY2Q49AN0 593 aa24.57■■□□□ 1.52
VPS28-209ENST00000528142 WDR33Q9C0J8 1336 aaKnown RBP24.56■■□□□ 1.52
VPS28-209ENST00000528142 DDR1Q08345 913 aa24.56■■□□□ 1.52
VPS28-209ENST00000528142 AIDAQ96BJ3 306 aa24.56■■□□□ 1.52
VPS28-209ENST00000528142 GJB2P29033 226 aa24.56■■□□□ 1.52
VPS28-209ENST00000528142 FOXD4L5Q5VV16 416 aaPredicted RBP24.56■■□□□ 1.52
VPS28-209ENST00000528142 FOXD4L4Q8WXT5 416 aaPredicted RBP24.56■■□□□ 1.52
VPS28-209ENST00000528142 DENND2AQ9ULE3 1009 aa24.56■■□□□ 1.52
VPS28-209ENST00000528142 IRS2Q9Y4H2 1338 aa24.55■■□□□ 1.52
VPS28-209ENST00000528142 SEMA3EO15041 775 aa24.55■■□□□ 1.52
VPS28-209ENST00000528142 SYT1P21579 422 aa24.55■■□□□ 1.52
VPS28-209ENST00000528142 HAND2P61296 217 aa24.55■■□□□ 1.52
VPS28-209ENST00000528142 ALX1Q15699 326 aa24.55■■□□□ 1.52
VPS28-209ENST00000528142 MCTP1Q6DN14 999 aa24.55■■□□□ 1.52
VPS28-209ENST00000528142 LRRC2Q9BYS8 371 aa24.55■■□□□ 1.52
VPS28-209ENST00000528142 LRP2BPQ9P2M1 347 aa24.55■■□□□ 1.52
VPS28-209ENST00000528142 POLRMTO00411 1230 aaKnown RBP24.54■■□□□ 1.52
VPS28-209ENST00000528142 ZNF213O14771 459 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 ZBTB22O15209 634 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 BAG6P46379 1132 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 ST5P78524 1137 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 VPS37DQ86XT2 251 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 FBXL16Q8N461 479 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 BRF1Q92994 677 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 MBD4O95243 580 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 SLC15A2Q16348 729 aa24.54■■□□□ 1.52
VPS28-209ENST00000528142 SKOR2Q2VWA4 1001 aaPredicted RBP24.54■■□□□ 1.52
VPS28-209ENST00000528142 PDS5AQ29RF7 1337 aaKnown RBP24.53■■□□□ 1.52
VPS28-209ENST00000528142 PATL2C9JE40 543 aaKnown RBP24.53■■□□□ 1.52
VPS28-209ENST00000528142 STX6O43752 255 aa24.53■■□□□ 1.52
VPS28-209ENST00000528142 NBPF3Q9H094 633 aa24.53■■□□□ 1.52
VPS28-209ENST00000528142 ZMYM6O95789 1325 aa24.52■■□□□ 1.52
VPS28-209ENST00000528142 HIBADHP31937 336 aaKnown RBP24.52■■□□□ 1.52
VPS28-209ENST00000528142 SF3B2Q13435 895 aaKnown RBP24.52■■□□□ 1.52
VPS28-209ENST00000528142 GTF3C6Q969F1 213 aa24.52■■□□□ 1.52
VPS28-209ENST00000528142 CHAMP1Q96JM3 812 aa24.52■■□□□ 1.52
VPS28-209ENST00000528142 LAMA4Q16363 1823 aa24.52■■□□□ 1.52
VPS28-209ENST00000528142 MB21D2Q8IYB1 491 aaPredicted RBP24.51■■□□□ 1.51
VPS28-209ENST00000528142 ARMT1Q9H993 441 aa24.51■■□□□ 1.51
VPS28-209ENST00000528142 LMBRD1Q9NUN5 540 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms