RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CDC25BP30305 580 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 GRIA4P48058 902 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 ATP2B2Q01814 1243 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 MBTPS1Q14703 1052 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 CCDC27Q2M243 656 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 ALG1LQ6GMV1 187 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 DNAJC14Q6Y2X3 702 aaPredicted RBP8.49□□□□□ -1.05
CD44-223ENST00000526553 MRPL18Q9H0U6 180 aaKnown RBP8.49□□□□□ -1.05
CD44-223ENST00000526553 ABCB6Q9NP58 842 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 ANKRD33BA6NCL7 494 aa8.48□□□□□ -1.05
CD44-223ENST00000526553 ITPKAP23677 461 aa8.48□□□□□ -1.05
CD44-223ENST00000526553 CD68P34810 354 aaPredicted RBP8.48□□□□□ -1.05
CD44-223ENST00000526553 PTPN12Q05209 780 aaKnown RBP8.48□□□□□ -1.05
CD44-223ENST00000526553 IKBKEQ14164 716 aa8.48□□□□□ -1.05
CD44-223ENST00000526553 GRM2Q14416 872 aa8.48□□□□□ -1.05
CD44-223ENST00000526553 GLIS3Q8NEA6 775 aa8.48□□□□□ -1.05
CD44-223ENST00000526553 CARD10Q9BWT7 1032 aa8.48□□□□□ -1.05
CD44-223ENST00000526553 CLEC4MQ9H2X3 399 aaPredicted RBP8.48□□□□□ -1.05
CD44-223ENST00000526553 SOX17Q9H6I2 414 aaPredicted RBP8.48□□□□□ -1.05
CD44-223ENST00000526553 USP21Q9UK80 565 aa8.48□□□□□ -1.05
CD44-223ENST00000526553 ESRRAP11474 423 aaPredicted RBP8.47□□□□□ -1.05
CD44-223ENST00000526553 GATA4P43694 442 aa8.47□□□□□ -1.05
CD44-223ENST00000526553 ARL4DP49703 201 aa8.47□□□□□ -1.05
CD44-223ENST00000526553 SUZ12Q15022 739 aaKnown RBP8.47□□□□□ -1.05
CD44-223ENST00000526553 SPRED3Q2MJR0 410 aa8.47□□□□□ -1.05
CD44-223ENST00000526553 FOXD4L6Q3SYB3 417 aaPredicted RBP8.47□□□□□ -1.05
CD44-223ENST00000526553 PI16Q6UXB8 463 aa8.47□□□□□ -1.05
CD44-223ENST00000526553 FOXD4L3Q6VB84 417 aaPredicted RBP8.47□□□□□ -1.05
CD44-223ENST00000526553 C19orf57Q0VDD7 668 aa8.46□□□□□ -1.06
CD44-223ENST00000526553 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.46□□□□□ -1.06
CD44-223ENST00000526553 TXNRD3Q86VQ6 643 aa8.46□□□□□ -1.06
CD44-223ENST00000526553 NPAS4Q8IUM7 802 aa8.46□□□□□ -1.06
CD44-223ENST00000526553 TMEM130Q8N3G9 435 aa8.46□□□□□ -1.06
CD44-223ENST00000526553 KLHDC7BQ96G42 594 aa8.46□□□□□ -1.06
CD44-223ENST00000526553 ZNF576Q9H609 170 aa8.46□□□□□ -1.06
CD44-223ENST00000526553 TMEM238LA0A1B0GVL6 79 aa8.45□□□□□ -1.06
CD44-223ENST00000526553 SOX1O00570 391 aaPredicted RBP8.45□□□□□ -1.06
CD44-223ENST00000526553 EIF4EBP3O60516 100 aaPredicted RBP8.45□□□□□ -1.06
CD44-223ENST00000526553 ERCC3P19447 782 aa8.45□□□□□ -1.06
CD44-223ENST00000526553 FGD1P98174 961 aa8.45□□□□□ -1.06
CD44-223ENST00000526553 PCDH1Q08174 1060 aa8.45□□□□□ -1.06
CD44-223ENST00000526553 SLC7A3Q8WY07 619 aa8.45□□□□□ -1.06
CD44-223ENST00000526553 BCO2Q9BYV7 579 aa8.45□□□□□ -1.06
CD44-223ENST00000526553 ADAM11O75078 769 aa8.44□□□□□ -1.06
CD44-223ENST00000526553 LDHBP07195 334 aaKnown RBP8.44□□□□□ -1.06
CD44-223ENST00000526553 RPS26P11Q5JNZ5 115 aaPredicted RBP8.44□□□□□ -1.06
CD44-223ENST00000526553 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.44□□□□□ -1.06
CD44-223ENST00000526553 FOXD4L4Q8WXT5 416 aaPredicted RBP8.44□□□□□ -1.06
CD44-223ENST00000526553 SETDB2Q96T68 719 aa8.44□□□□□ -1.06
CD44-223ENST00000526553 SRCIN1Q9C0H9 1055 aa8.44□□□□□ -1.06
CD44-223ENST00000526553 PPP4R2Q9NY27 417 aa8.44□□□□□ -1.06
CD44-223ENST00000526553 KCNK4Q9NYG8 393 aa8.44□□□□□ -1.06
CD44-223ENST00000526553 WWC3Q9ULE0 1092 aa8.44□□□□□ -1.06
CD44-223ENST00000526553 F8W735 103 aaPredicted RBP8.43□□□□□ -1.06
CD44-223ENST00000526553 GIPC1O14908 333 aa8.43□□□□□ -1.06
CD44-223ENST00000526553 XRCC5P13010 732 aaKnown RBP8.43□□□□□ -1.06
CD44-223ENST00000526553 EAPPQ56P03 285 aaPredicted RBP8.43□□□□□ -1.06
CD44-223ENST00000526553 HGSNATQ68CP4 663 aa8.43□□□□□ -1.06
CD44-223ENST00000526553 WFDC12Q8WWY7 111 aa8.43□□□□□ -1.06
CD44-223ENST00000526553 AKTIPQ9H8T0 292 aa8.43□□□□□ -1.06
CD44-223ENST00000526553 ZFYVE1Q9HBF4 777 aa8.43□□□□□ -1.06
CD44-223ENST00000526553 PRPF40AO75400 957 aaKnown RBP8.42□□□□□ -1.06
CD44-223ENST00000526553 WISP1O95388 367 aa8.42□□□□□ -1.06
CD44-223ENST00000526553 B3GALT4O96024 378 aa8.42□□□□□ -1.06
CD44-223ENST00000526553 NOS3P29474 1203 aa8.42□□□□□ -1.06
CD44-223ENST00000526553 ZNF423Q2M1K9 1284 aa8.42□□□□□ -1.06
CD44-223ENST00000526553 Q6ZS46 218 aa8.42□□□□□ -1.06
CD44-223ENST00000526553 FRMD6Q96NE9 622 aa8.42□□□□□ -1.06
CD44-223ENST00000526553 SPG7Q9UQ90 795 aa8.42□□□□□ -1.06
CD44-223ENST00000526553 DDX3YO15523 660 aaKnown RBP8.41□□□□□ -1.06
CD44-223ENST00000526553 IREB2P48200 963 aaKnown RBP8.41□□□□□ -1.06
CD44-223ENST00000526553 NLRP12P59046 1061 aa8.41□□□□□ -1.06
CD44-223ENST00000526553 DUOXA2Q1HG44 320 aa8.41□□□□□ -1.06
CD44-223ENST00000526553 NXPE4Q6UWF7 544 aa8.41□□□□□ -1.06
CD44-223ENST00000526553 DTHD1Q6ZMT9 781 aa8.41□□□□□ -1.06
CD44-223ENST00000526553 ACAD11Q709F0 780 aa8.41□□□□□ -1.06
CD44-223ENST00000526553 UBASH3BQ8TF42 649 aa8.41□□□□□ -1.06
CD44-223ENST00000526553 FCGRTP55899 365 aa8.4□□□□□ -1.06
CD44-223ENST00000526553 TMCO4Q5TGY1 634 aa8.4□□□□□ -1.06
CD44-223ENST00000526553 KIAA1211Q6ZU35 1233 aa8.4□□□□□ -1.06
CD44-223ENST00000526553 DDX54Q8TDD1 881 aaKnown RBP8.4□□□□□ -1.06
CD44-223ENST00000526553 SSBP4Q9BWG4 385 aaPredicted RBP8.4□□□□□ -1.06
CD44-223ENST00000526553 GSTT1P30711 240 aa8.39□□□□□ -1.07
CD44-223ENST00000526553 GSTM4Q03013 218 aa8.39□□□□□ -1.07
CD44-223ENST00000526553 OSBPL7Q9BZF2 842 aa8.39□□□□□ -1.07
CD44-223ENST00000526553 NRSN2Q9GZP1 204 aa8.39□□□□□ -1.07
CD44-223ENST00000526553 C12orf49Q9H741 205 aa8.39□□□□□ -1.07
CD44-223ENST00000526553 TPSG1Q9NRR2 321 aa8.39□□□□□ -1.07
CD44-223ENST00000526553 ALX3O95076 343 aa8.38□□□□□ -1.07
CD44-223ENST00000526553 GNA15P30679 374 aa8.38□□□□□ -1.07
CD44-223ENST00000526553 FBXO33Q7Z6M2 555 aa8.38□□□□□ -1.07
CD44-223ENST00000526553 AGGF1Q8N302 714 aaeCLIP8.38□□□□□ -1.07
CD44-223ENST00000526553 C3orf58Q8NDZ4 430 aa8.38□□□□□ -1.07
CD44-223ENST00000526553 LOC100289279A0A1B0GTE1 492 aa8.37□□□□□ -1.07
CD44-223ENST00000526553 FAAP100Q0VG06 881 aa8.37□□□□□ -1.07
CD44-223ENST00000526553 DOC2BQ14184 412 aa8.37□□□□□ -1.07
CD44-223ENST00000526553 DZIP1LQ8IYY4 767 aaKnown RBP8.37□□□□□ -1.07
CD44-223ENST00000526553 MEGF10Q96KG7 1140 aa8.37□□□□□ -1.07
CD44-223ENST00000526553 USP26Q9BXU7 913 aa8.37□□□□□ -1.07
CD44-223ENST00000526553 RNF208Q9H0X6 261 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms