RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 ARID4AP29374 1257 aaPredicted RBP25.47■■□□□ 1.67
CD44-222ENST00000526025 MMP14P50281 582 aa25.47■■□□□ 1.67
CD44-222ENST00000526025 GTF2IP78347 998 aa25.47■■□□□ 1.67
CD44-222ENST00000526025 CCDC158Q5M9N0 1113 aa25.47■■□□□ 1.67
CD44-222ENST00000526025 DENND2AQ9ULE3 1009 aa25.47■■□□□ 1.67
CD44-222ENST00000526025 GJA3Q9Y6H8 435 aa25.47■■□□□ 1.67
CD44-222ENST00000526025 IFIT2P09913 472 aaKnown RBP25.46■■□□□ 1.67
CD44-222ENST00000526025 TBC1D22AQ8WUA7 517 aa25.46■■□□□ 1.67
CD44-222ENST00000526025 GMLQ99445 158 aa25.46■■□□□ 1.67
CD44-222ENST00000526025 IQCA1LA6NCM1 817 aa25.45■■□□□ 1.66
CD44-222ENST00000526025 FRAT2O75474 233 aaPredicted RBP25.45■■□□□ 1.66
CD44-222ENST00000526025 CCDC8Q9H0W5 538 aaPredicted RBP25.45■■□□□ 1.66
CD44-222ENST00000526025 COL1A1P02452 1464 aaPredicted RBP25.45■■□□□ 1.66
CD44-222ENST00000526025 GMPSP49915 693 aaPredicted RBP25.44■■□□□ 1.66
CD44-222ENST00000526025 SCNN1DP51172 638 aa25.44■■□□□ 1.66
CD44-222ENST00000526025 SALL1Q9NSC2 1324 aa25.43■■□□□ 1.66
CD44-222ENST00000526025 RASGRF1Q13972 1273 aa25.43■■□□□ 1.66
CD44-222ENST00000526025 ZNF784Q8NCA9 323 aaPredicted RBP25.43■■□□□ 1.66
CD44-222ENST00000526025 WDR66Q8TBY9 1149 aa25.43■■□□□ 1.66
CD44-222ENST00000526025 GPBP1L1Q9HC44 474 aaPredicted RBP25.43■■□□□ 1.66
CD44-222ENST00000526025 TLR7Q9NYK1 1049 aaKnown RBP25.43■■□□□ 1.66
CD44-222ENST00000526025 GPRC5DQ9NZD1 345 aa25.43■■□□□ 1.66
CD44-222ENST00000526025 POTECB2RU33 542 aa25.42■■□□□ 1.66
CD44-222ENST00000526025 SMARCA5O60264 1052 aaPredicted RBP25.42■■□□□ 1.66
CD44-222ENST00000526025 VEGFAP15692 232 aaPredicted RBP25.42■■□□□ 1.66
CD44-222ENST00000526025 LMOD1P29536 600 aaPredicted RBP25.42■■□□□ 1.66
CD44-222ENST00000526025 TTC39AQ5SRH9 613 aa25.42■■□□□ 1.66
CD44-222ENST00000526025 ZBTB47Q9UFB7 747 aaPredicted RBP25.42■■□□□ 1.66
CD44-222ENST00000526025 IQSEC3Q9UPP2 1182 aaPredicted RBP25.42■■□□□ 1.66
CD44-222ENST00000526025 SUGT1Q9Y2Z0 365 aa25.42■■□□□ 1.66
CD44-222ENST00000526025 MFSD14BQ5SR56 506 aa25.41■■□□□ 1.66
CD44-222ENST00000526025 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.41■■□□□ 1.66
CD44-222ENST00000526025 FBXW7Q969H0 707 aa25.41■■□□□ 1.66
CD44-222ENST00000526025 HACL1Q9UJ83 578 aa25.41■■□□□ 1.66
CD44-222ENST00000526025 ZBTB12Q9Y330 459 aaPredicted RBP25.41■■□□□ 1.66
CD44-222ENST00000526025 ANKRD45Q5TZF3 282 aa25.4■■□□□ 1.66
CD44-222ENST00000526025 CERS5Q8N5B7 392 aa25.4■■□□□ 1.66
CD44-222ENST00000526025 MCAMP43121 646 aa25.39■■□□□ 1.66
CD44-222ENST00000526025 ZNF280AP59817 542 aaPredicted RBP25.39■■□□□ 1.66
CD44-222ENST00000526025 CHAF1AQ13111 956 aaPredicted RBP25.39■■□□□ 1.66
CD44-222ENST00000526025 ZGPATQ8N5A5 531 aaKnown RBP25.39■■□□□ 1.66
CD44-222ENST00000526025 SPATA5Q8NB90 893 aa25.39■■□□□ 1.66
CD44-222ENST00000526025 HMG20BQ9P0W2 317 aa25.39■■□□□ 1.66
CD44-222ENST00000526025 IGSF3O75054 1194 aa25.38■■□□□ 1.65
CD44-222ENST00000526025 USP17L8P0C7I0 530 aa25.38■■□□□ 1.65
CD44-222ENST00000526025 NUCB1Q02818 461 aa25.38■■□□□ 1.65
CD44-222ENST00000526025 MICALL2Q8IY33 904 aa25.38■■□□□ 1.65
CD44-222ENST00000526025 ZNF526Q8TF50 670 aaPredicted RBP25.38■■□□□ 1.65
CD44-222ENST00000526025 RRAGCQ9HB90 399 aa25.38■■□□□ 1.65
CD44-222ENST00000526025 NMRK2Q9NPI5 230 aa25.38■■□□□ 1.65
CD44-222ENST00000526025 CNOT7Q9UIV1 285 aaKnown RBP25.38■■□□□ 1.65
CD44-222ENST00000526025 ADAMTSL1Q8N6G6 1762 aa25.37■■□□□ 1.65
CD44-222ENST00000526025 H7C1D1 291 aa25.37■■□□□ 1.65
CD44-222ENST00000526025 GPATCH3Q96I76 525 aa25.37■■□□□ 1.65
CD44-222ENST00000526025 MXD3Q9BW11 206 aa25.37■■□□□ 1.65
CD44-222ENST00000526025 TAF1DQ9H5J8 278 aaPredicted RBP25.37■■□□□ 1.65
CD44-222ENST00000526025 ADARB2Q9NS39 739 aaKnown RBP25.37■■□□□ 1.65
CD44-222ENST00000526025 DOCK2Q92608 1830 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 ATP5JP18859 108 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 EPHX2P34913 555 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 SCARF1Q14162 830 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 OGFOD1Q8N543 542 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 HDAC9Q9UKV0 1011 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 JAG2Q9Y219 1238 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 MAST3O60307 1309 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 TTC41PQ6P2S7 1318 aa25.36■■□□□ 1.65
CD44-222ENST00000526025 EPS15P42566 896 aa25.35■■□□□ 1.65
CD44-222ENST00000526025 PNMA8AQ86V59 439 aaPredicted RBP25.35■■□□□ 1.65
CD44-222ENST00000526025 CHD1LQ86WJ1 897 aa25.35■■□□□ 1.65
CD44-222ENST00000526025 ECHDC1Q9NTX5 307 aa25.35■■□□□ 1.65
CD44-222ENST00000526025 MAST2Q6P0Q8 1798 aa25.35■■□□□ 1.65
CD44-222ENST00000526025 ECM29Q5VYK3 1845 aa25.35■■□□□ 1.65
CD44-222ENST00000526025 SALL3Q9BXA9 1300 aa25.35■■□□□ 1.65
CD44-222ENST00000526025 HDLBPQ00341 1268 aaKnown RBP25.34■■□□□ 1.65
CD44-222ENST00000526025 SPTY2D1Q68D10 685 aaPredicted RBP25.34■■□□□ 1.65
CD44-222ENST00000526025 USP50Q70EL3 339 aaPredicted RBP25.34■■□□□ 1.65
CD44-222ENST00000526025 KIAA0825Q8IV33 1275 aa25.34■■□□□ 1.65
CD44-222ENST00000526025 MRIQ9BWK5 157 aa25.34■■□□□ 1.65
CD44-222ENST00000526025 CENPQQ7L2Z9 268 aaPredicted RBP25.33■■□□□ 1.65
CD44-222ENST00000526025 MYO5AQ9Y4I1 1855 aaKnown RBP25.33■■□□□ 1.65
CD44-222ENST00000526025 KIF3CO14782 793 aa25.32■■□□□ 1.64
CD44-222ENST00000526025 MTMR14Q8NCE2 650 aa25.32■■□□□ 1.64
CD44-222ENST00000526025 MYH2Q9UKX2 1941 aa25.31■■□□□ 1.64
CD44-222ENST00000526025 MX1P20591 662 aa25.31■■□□□ 1.64
CD44-222ENST00000526025 B4GALNT3Q6L9W6 998 aa25.31■■□□□ 1.64
CD44-222ENST00000526025 PI16Q6UXB8 463 aa25.31■■□□□ 1.64
CD44-222ENST00000526025 LNPKQ9C0E8 428 aa25.31■■□□□ 1.64
CD44-222ENST00000526025 MYOZ2Q9NPC6 264 aa25.31■■□□□ 1.64
CD44-222ENST00000526025 STAP2Q9UGK3 403 aa25.31■■□□□ 1.64
CD44-222ENST00000526025 SERPINA10Q9UK55 444 aa25.31■■□□□ 1.64
CD44-222ENST00000526025 TTF2Q9UNY4 1162 aaKnown RBP25.31■■□□□ 1.64
CD44-222ENST00000526025 SHTN1A0MZ66 631 aa25.3■■□□□ 1.64
CD44-222ENST00000526025 ERC2O15083 957 aa25.3■■□□□ 1.64
CD44-222ENST00000526025 LDHBP07195 334 aaKnown RBP25.3■■□□□ 1.64
CD44-222ENST00000526025 TMED8Q6PL24 325 aaPredicted RBP25.3■■□□□ 1.64
CD44-222ENST00000526025 CCDC136Q96JN2 1154 aa25.3■■□□□ 1.64
CD44-222ENST00000526025 HAUS7Q99871 368 aa25.3■■□□□ 1.64
CD44-222ENST00000526025 MYH7P12883 1935 aa25.29■■□□□ 1.64
CD44-222ENST00000526025 CYP2E1P05181 493 aaPredicted RBP25.29■■□□□ 1.64
CD44-222ENST00000526025 ZAP70P43403 619 aa25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms