RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 EPHA1P21709 976 aa9.54□□□□□ -0.88
SKP1-213ENST00000524288 PIP4K2BP78356 416 aa9.54□□□□□ -0.88
SKP1-213ENST00000524288 FMR1Q06787 632 aaKnown RBP eCLIP9.54□□□□□ -0.88
SKP1-213ENST00000524288 FAM129BQ96TA1 746 aa9.54□□□□□ -0.88
SKP1-213ENST00000524288 NIF3L1Q9GZT8 377 aa9.54□□□□□ -0.88
SKP1-213ENST00000524288 CHRDQ9H2X0 955 aa9.54□□□□□ -0.88
SKP1-213ENST00000524288 NFKBIEO00221 500 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 PDE2AO00408 941 aaPredicted RBP9.53□□□□□ -0.88
SKP1-213ENST00000524288 TNFRSF21O75509 655 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 ALX3O95076 343 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 IGHA2P01877 340 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 PLCB3Q01970 1234 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 ARTNQ5T4W7 220 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 CEP41Q9BYV8 373 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 OSGEPQ9NPF4 335 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 SEC31BQ9NQW1 1179 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 RNF19AQ9NV58 838 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 WWC3Q9ULE0 1092 aa9.53□□□□□ -0.88
SKP1-213ENST00000524288 PHACTR2O75167 634 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 EDN3P14138 238 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 GLB1P16278 677 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 DSC3Q14574 896 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 UVSSAQ2YD98 709 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 TXNDC11Q6PKC3 985 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 ADAMTSL4Q6UY14 1074 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 GJD3Q8N144 294 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 TMEM102Q8N9M5 508 aaPredicted RBP9.52□□□□□ -0.89
SKP1-213ENST00000524288 DMRTB1Q96MA1 342 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 FAM161BQ96MY7 647 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 CITED4Q96RK1 184 aa9.52□□□□□ -0.89
SKP1-213ENST00000524288 SH2B1Q9NRF2 756 aaPredicted RBP9.52□□□□□ -0.89
SKP1-213ENST00000524288 LDHBP07195 334 aaKnown RBP9.51□□□□□ -0.89
SKP1-213ENST00000524288 PDE3BQ13370 1112 aa9.51□□□□□ -0.89
SKP1-213ENST00000524288 COL19A1Q14993 1142 aa9.51□□□□□ -0.89
SKP1-213ENST00000524288 LRP8Q14114 963 aa9.5□□□□□ -0.89
SKP1-213ENST00000524288 DUOXA2Q1HG44 320 aa9.5□□□□□ -0.89
SKP1-213ENST00000524288 ACAD11Q709F0 780 aa9.5□□□□□ -0.89
SKP1-213ENST00000524288 AGGF1Q8N302 714 aaeCLIP9.5□□□□□ -0.89
SKP1-213ENST00000524288 CARD10Q9BWT7 1032 aa9.5□□□□□ -0.89
SKP1-213ENST00000524288 ZFP64Q9NPA5 681 aa9.5□□□□□ -0.89
SKP1-213ENST00000524288 WISP1O95388 367 aa9.49□□□□□ -0.89
SKP1-213ENST00000524288 CDC25BP30305 580 aa9.49□□□□□ -0.89
SKP1-213ENST00000524288 TSNAXIP1Q2TAA8 658 aa9.49□□□□□ -0.89
SKP1-213ENST00000524288 KCNK4Q9NYG8 393 aa9.49□□□□□ -0.89
SKP1-213ENST00000524288 SOX13Q9UN79 622 aa9.49□□□□□ -0.89
SKP1-213ENST00000524288 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.49□□□□□ -0.89
SKP1-213ENST00000524288 PNMA6FA0A0J9YX94 578 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 EREGO14944 169 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 GSC2O15499 205 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 RECKO95980 971 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 ACPPP15309 386 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 ARL4DP49703 201 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 ORC1Q13415 861 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 BSNDQ8WZ55 320 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 NXPE3Q969Y0 559 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 OSMRQ99650 979 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 DUSP9Q99956 384 aaKnown RBP9.48□□□□□ -0.89
SKP1-213ENST00000524288 IGSF5Q9NSI5 407 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 RNF112Q9ULX5 631 aa9.48□□□□□ -0.89
SKP1-213ENST00000524288 KIAA1211Q6ZU35 1233 aa9.47□□□□□ -0.89
SKP1-213ENST00000524288 KLHDC7BQ96G42 594 aa9.47□□□□□ -0.89
SKP1-213ENST00000524288 ZKSCAN3Q9BRR0 538 aa9.47□□□□□ -0.89
SKP1-213ENST00000524288 BHLHE41Q9C0J9 482 aaPredicted RBP9.47□□□□□ -0.89
SKP1-213ENST00000524288 PARP2Q9UGN5 583 aa9.47□□□□□ -0.89
SKP1-213ENST00000524288 RAXQ9Y2V3 346 aa9.47□□□□□ -0.89
SKP1-213ENST00000524288 DHX15O43143 795 aaKnown RBP9.46□□□□□ -0.9
SKP1-213ENST00000524288 EIF4EBP3O60516 100 aaPredicted RBP9.46□□□□□ -0.9
SKP1-213ENST00000524288 ADAM11O75078 769 aa9.46□□□□□ -0.9
SKP1-213ENST00000524288 TCF3P15923 654 aa9.46□□□□□ -0.9
SKP1-213ENST00000524288 FSTP19883 344 aa9.46□□□□□ -0.9
SKP1-213ENST00000524288 XPCQ01831 940 aaPredicted RBP9.46□□□□□ -0.9
SKP1-213ENST00000524288 ALKBH8Q96BT7 664 aaKnown RBP9.46□□□□□ -0.9
SKP1-213ENST00000524288 UBL7Q96S82 380 aaPredicted RBP9.46□□□□□ -0.9
SKP1-213ENST00000524288 FOXD3Q9UJU5 478 aaPredicted RBP9.46□□□□□ -0.9
SKP1-213ENST00000524288 ATP2B2Q01814 1243 aa9.45□□□□□ -0.9
SKP1-213ENST00000524288 C19orf57Q0VDD7 668 aa9.45□□□□□ -0.9
SKP1-213ENST00000524288 ANKRD34AQ69YU3 496 aa9.45□□□□□ -0.9
SKP1-213ENST00000524288 FAM46AQ96IP4 442 aaKnown RBP9.45□□□□□ -0.9
SKP1-213ENST00000524288 HHIPQ96QV1 700 aa9.45□□□□□ -0.9
SKP1-213ENST00000524288 IGSF3O75054 1194 aa9.44□□□□□ -0.9
SKP1-213ENST00000524288 PRPF40AO75400 957 aaKnown RBP9.44□□□□□ -0.9
SKP1-213ENST00000524288 NEFLP07196 543 aa9.44□□□□□ -0.9
SKP1-213ENST00000524288 ENOX2Q16206 610 aaKnown RBP9.44□□□□□ -0.9
SKP1-213ENST00000524288 UBASH3BQ8TF42 649 aa9.44□□□□□ -0.9
SKP1-213ENST00000524288 RNF208Q9H0X6 261 aa9.44□□□□□ -0.9
SKP1-213ENST00000524288 SOX17Q9H6I2 414 aaPredicted RBP9.44□□□□□ -0.9
SKP1-213ENST00000524288 ZFYVE28Q9HCC9 887 aa9.44□□□□□ -0.9
SKP1-213ENST00000524288 TRPA1O75762 1119 aa9.43□□□□□ -0.9
SKP1-213ENST00000524288 ARMC10Q8N2F6 343 aa9.43□□□□□ -0.9
SKP1-213ENST00000524288 UTP4Q969X6 686 aaKnown RBP9.43□□□□□ -0.9
SKP1-213ENST00000524288 CSRNP1Q96S65 589 aa9.43□□□□□ -0.9
SKP1-213ENST00000524288 BACH2Q9BYV9 841 aa9.43□□□□□ -0.9
SKP1-213ENST00000524288 STOML1Q9UBI4 398 aa9.43□□□□□ -0.9
SKP1-213ENST00000524288 DDX3YO15523 660 aaKnown RBP9.42□□□□□ -0.9
SKP1-213ENST00000524288 VAMP1P23763 118 aa9.42□□□□□ -0.9
SKP1-213ENST00000524288 IKBKEQ14164 716 aa9.42□□□□□ -0.9
SKP1-213ENST00000524288 PEAR1Q5VY43 1037 aaPredicted RBP9.42□□□□□ -0.9
SKP1-213ENST00000524288 VN1R5Q7Z5H4 357 aa9.42□□□□□ -0.9
SKP1-213ENST00000524288 NBPF11Q86T75 865 aa9.42□□□□□ -0.9
SKP1-213ENST00000524288 SLC7A3Q8WY07 619 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms