RNA–Protein interactions for RNA: ENST00000523952.5

PTPN12-216, Transcript of protein tyrosine phosphatase, non-receptor type 12, human

TSL 4

Gene PTPN12, Length 500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN12-216	ENST00000523952	JARID2	Q92833	1246 aa	Predicted RBP	12.03	□□□□□ -0.48
PTPN12-216	ENST00000523952	ARMC5	Q96C12	935 aa		12.03	□□□□□ -0.48
PTPN12-216	ENST00000523952	DEFB129	Q9H1M3	183 aa		12.03	□□□□□ -0.48
PTPN12-216	ENST00000523952	SPDYE2B	A6NHP3	402 aa		12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	WDHD1	O75717	1129 aa	Predicted RBP	12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	DDX58	O95786	925 aa	Known RBP	12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	MYC	P01106	439 aa	Predicted RBP	12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	SPDYE6	P0CI01	402 aa		12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	SPDYE2	Q495Y8	402 aa		12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	CLMN	Q96JQ2	1002 aa		12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	PPP2R3B	Q9Y5P8	575 aa		12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	ARAP2	Q8WZ64	1704 aa		12.02	□□□□□ -0.49
PTPN12-216	ENST00000523952	GABBR2	O75899	941 aa		12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	IGHMBP2	P38935	993 aa	Known RBP	12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	CTSW	P56202	376 aa		12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	GTF2I	P78347	998 aa		12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	DUSP27	Q5VZP5	1158 aa		12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	CCDC146	Q8IYE0	955 aa		12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	VEZT	Q9HBM0	779 aa		12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	BSDC1	Q9NW68	430 aa	Predicted RBP	12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	MINPP1	Q9UNW1	487 aa		12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	MYH13	Q9UKX3	1938 aa		12.01	□□□□□ -0.49
PTPN12-216	ENST00000523952	UNCX	A6NJT0	531 aa		12	□□□□□ -0.49
PTPN12-216	ENST00000523952	KIF22	Q14807	665 aa		12	□□□□□ -0.49
PTPN12-216	ENST00000523952	ANKRD13A	Q8IZ07	590 aa		12	□□□□□ -0.49
PTPN12-216	ENST00000523952	ZNF333	Q96JL9	665 aa		12	□□□□□ -0.49
PTPN12-216	ENST00000523952	PHAX	Q9H814	394 aa	Known RBP	12	□□□□□ -0.49
PTPN12-216	ENST00000523952	LEMD3	Q9Y2U8	911 aa		12	□□□□□ -0.49
PTPN12-216	ENST00000523952	BRCA2	P51587	3418 aa		12	□□□□□ -0.49
PTPN12-216	ENST00000523952		H0YGN5	161 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	DLL1	O00548	723 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	RBM5	P52756	815 aa	Known RBP eCLIP	11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	NEXN	Q0ZGT2	675 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	TAF1C	Q15572	869 aa	Predicted RBP	11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	MAP3K11	Q16584	847 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	SLC17A8	Q8NDX2	589 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	DPF3	Q92784	378 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	MPHOSPH8	Q99549	860 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	ANKRD2	Q9GZV1	360 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	ZFYVE28	Q9HCC9	887 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	PTCH2	Q9Y6C5	1203 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	ZNF804B	A4D1E1	1349 aa		11.99	□□□□□ -0.49
PTPN12-216	ENST00000523952	SSC5D	A1L4H1	1573 aa		11.98	□□□□□ -0.49
PTPN12-216	ENST00000523952	CLRN2	A0PK11	232 aa		11.98	□□□□□ -0.49
PTPN12-216	ENST00000523952	WTIP	A6NIX2	430 aa	Predicted RBP	11.98	□□□□□ -0.49
PTPN12-216	ENST00000523952		F8W031	263 aa	Predicted RBP	11.98	□□□□□ -0.49
PTPN12-216	ENST00000523952	METTL22	Q9BUU2	404 aa	Predicted RBP	11.98	□□□□□ -0.49
PTPN12-216	ENST00000523952	CHMP4A	Q9BY43	222 aa		11.98	□□□□□ -0.49
PTPN12-216	ENST00000523952	GREM2	Q9H772	168 aa		11.98	□□□□□ -0.49
PTPN12-216	ENST00000523952	ELP3	Q9H9T3	547 aa		11.98	□□□□□ -0.49
PTPN12-216	ENST00000523952	WDR43	Q15061	677 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
PTPN12-216	ENST00000523952	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.97	□□□□□ -0.49
PTPN12-216	ENST00000523952	TXNRD3	Q86VQ6	643 aa		11.97	□□□□□ -0.49
PTPN12-216	ENST00000523952	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.97	□□□□□ -0.49
PTPN12-216	ENST00000523952	TTLL11	Q8NHH1	800 aa		11.97	□□□□□ -0.49
PTPN12-216	ENST00000523952	OPTN	Q96CV9	577 aa		11.97	□□□□□ -0.49
PTPN12-216	ENST00000523952	ELL2	O00472	640 aa	Predicted RBP	11.96	□□□□□ -0.49
PTPN12-216	ENST00000523952	TNFAIP1	Q13829	316 aa		11.96	□□□□□ -0.49
PTPN12-216	ENST00000523952	CFAP100	Q494V2	611 aa		11.96	□□□□□ -0.49
PTPN12-216	ENST00000523952	RUNDC1	Q96C34	613 aa		11.96	□□□□□ -0.49
PTPN12-216	ENST00000523952	ZBED3	Q96IU2	234 aa	Predicted RBP	11.96	□□□□□ -0.49
PTPN12-216	ENST00000523952	MAP3K2	Q9Y2U5	619 aa		11.96	□□□□□ -0.49
PTPN12-216	ENST00000523952	CCL15-CCL14	A0A0B4J2E2	113 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	USP2	O75604	605 aa	Predicted RBP	11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	GTF2A2	P52657	109 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	CCL15	Q16663	113 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	ZNF804A	Q7Z570	1209 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	MTMR14	Q8NCE2	650 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	SH3TC2	Q8TF17	1288 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	PTPN18	Q99952	460 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	MBIP	Q9NS73	344 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	TRIM35	Q9UPQ4	493 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	CSAD	Q9Y600	493 aa		11.95	□□□□□ -0.5
PTPN12-216	ENST00000523952	TESPA1	A2RU30	521 aa	Predicted RBP	11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	KLRK1	P26718	216 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	GJA5	P36382	358 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	RASA3	Q14644	834 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	CCDC30	Q5VVM6	783 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	UBE3B	Q7Z3V4	1068 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	OTUD5	Q96G74	571 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	HTATIP2	Q9BUP3	242 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	CD209	Q9NNX6	404 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	SZT2	Q5T011	3432 aa		11.94	□□□□□ -0.5
PTPN12-216	ENST00000523952	ECM2	O94769	699 aa	Predicted RBP	11.93	□□□□□ -0.5
PTPN12-216	ENST00000523952	ITGA6	P23229	1130 aa		11.93	□□□□□ -0.5
PTPN12-216	ENST00000523952	TNNI2	P48788	182 aa		11.93	□□□□□ -0.5
PTPN12-216	ENST00000523952	CALD1	Q05682	793 aa	Known RBP	11.93	□□□□□ -0.5
PTPN12-216	ENST00000523952	PRMT6	Q96LA8	375 aa	Predicted RBP	11.93	□□□□□ -0.5
PTPN12-216	ENST00000523952	RBM27	Q9P2N5	1060 aa	Known RBP	11.93	□□□□□ -0.5
PTPN12-216	ENST00000523952	PCDHAC2	Q9Y5I4	1007 aa		11.93	□□□□□ -0.5
PTPN12-216	ENST00000523952	NR2E3	Q9Y5X4	410 aa		11.93	□□□□□ -0.5
PTPN12-216	ENST00000523952	ALPK3	Q96L96	1907 aa		11.92	□□□□□ -0.5
PTPN12-216	ENST00000523952	GNRH1	P01148	92 aa		11.92	□□□□□ -0.5
PTPN12-216	ENST00000523952	PRMT2	P55345	433 aa		11.92	□□□□□ -0.5
PTPN12-216	ENST00000523952	GNAI1	P63096	354 aa		11.92	□□□□□ -0.5
PTPN12-216	ENST00000523952	CHRND	Q07001	517 aa		11.92	□□□□□ -0.5
PTPN12-216	ENST00000523952	RALBP1	Q15311	655 aa		11.92	□□□□□ -0.5
PTPN12-216	ENST00000523952	KSR2	Q6VAB6	950 aa		11.92	□□□□□ -0.5
PTPN12-216	ENST00000523952	NKX2-3	Q8TAU0	364 aa		11.92	□□□□□ -0.5
PTPN12-216	ENST00000523952	STK31	Q9BXU1	1019 aa		11.92	□□□□□ -0.5

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