RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 C12orf49Q9H741 205 aa9.74□□□□□ -0.85
CPNE3-201ENST00000517354 HOXB4P17483 251 aaPredicted RBP9.73□□□□□ -0.85
CPNE3-201ENST00000517354 RBM25P49756 843 aaKnown RBP9.73□□□□□ -0.85
CPNE3-201ENST00000517354 DAB2P98082 770 aa9.73□□□□□ -0.85
CPNE3-201ENST00000517354 PRPF40BQ6NWY9 871 aaKnown RBP9.73□□□□□ -0.85
CPNE3-201ENST00000517354 TRIM11Q96F44 468 aa9.73□□□□□ -0.85
CPNE3-201ENST00000517354 OSBPL7Q9BZF2 842 aa9.73□□□□□ -0.85
CPNE3-201ENST00000517354 FAM8A1Q9UBU6 413 aa9.73□□□□□ -0.85
CPNE3-201ENST00000517354 VTI1BQ9UEU0 232 aa9.73□□□□□ -0.85
CPNE3-201ENST00000517354 H3BRJ5 948 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 RNF225M0QZC1 329 aaPredicted RBP9.72□□□□□ -0.85
CPNE3-201ENST00000517354 TXNDC11Q6PKC3 985 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 TMC4Q7Z404 712 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 MAP4K3Q8IVH8 894 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 DTWD1Q8N5C7 304 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 DCAF11Q8TEB1 546 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 SLC7A3Q8WY07 619 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 FAM161BQ96MY7 647 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 RNF19AQ9NV58 838 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 SOX13Q9UN79 622 aa9.72□□□□□ -0.85
CPNE3-201ENST00000517354 EPHA1P21709 976 aa9.71□□□□□ -0.86
CPNE3-201ENST00000517354 BAG6P46379 1132 aa9.71□□□□□ -0.86
CPNE3-201ENST00000517354 PTPN12Q05209 780 aaKnown RBP9.71□□□□□ -0.86
CPNE3-201ENST00000517354 COL9A3Q14050 684 aaPredicted RBP9.71□□□□□ -0.86
CPNE3-201ENST00000517354 CLEC4MQ9H2X3 399 aaPredicted RBP9.71□□□□□ -0.86
CPNE3-201ENST00000517354 ABCB6Q9NP58 842 aa9.71□□□□□ -0.86
CPNE3-201ENST00000517354 A0A0A0MRY4 1105 aa9.7□□□□□ -0.86
CPNE3-201ENST00000517354 EIF4EBP3O60516 100 aaPredicted RBP9.7□□□□□ -0.86
CPNE3-201ENST00000517354 USP17L7P0C7H9 530 aa9.7□□□□□ -0.86
CPNE3-201ENST00000517354 PIP4K2BP78356 416 aa9.7□□□□□ -0.86
CPNE3-201ENST00000517354 PCDH1Q08174 1060 aa9.7□□□□□ -0.86
CPNE3-201ENST00000517354 GLIS3Q8NEA6 775 aa9.7□□□□□ -0.86
CPNE3-201ENST00000517354 SRA1Q9HD15 236 aaKnown RBP9.7□□□□□ -0.86
CPNE3-201ENST00000517354 SEC31BQ9NQW1 1179 aa9.7□□□□□ -0.86
CPNE3-201ENST00000517354 FSCN2O14926 492 aa9.69□□□□□ -0.86
CPNE3-201ENST00000517354 ITPKAP23677 461 aa9.69□□□□□ -0.86
CPNE3-201ENST00000517354 C19orf57Q0VDD7 668 aa9.69□□□□□ -0.86
CPNE3-201ENST00000517354 VN1R5Q7Z5H4 357 aa9.69□□□□□ -0.86
CPNE3-201ENST00000517354 WNT8BQ93098 351 aa9.69□□□□□ -0.86
CPNE3-201ENST00000517354 APBA3O96018 575 aa9.68□□□□□ -0.86
CPNE3-201ENST00000517354 RPS26P11Q5JNZ5 115 aaPredicted RBP9.68□□□□□ -0.86
CPNE3-201ENST00000517354 ADAMTSL4Q6UY14 1074 aa9.68□□□□□ -0.86
CPNE3-201ENST00000517354 FBXO11Q86XK2 927 aa9.68□□□□□ -0.86
CPNE3-201ENST00000517354 KLHL23Q8NBE8 558 aa9.68□□□□□ -0.86
CPNE3-201ENST00000517354 GPN3Q9UHW5 284 aaPredicted RBP9.68□□□□□ -0.86
CPNE3-201ENST00000517354 FAM229AH3BQW9 127 aa9.67□□□□□ -0.86
CPNE3-201ENST00000517354 SOX1O00570 391 aaPredicted RBP9.67□□□□□ -0.86
CPNE3-201ENST00000517354 GSTM4Q03013 218 aa9.67□□□□□ -0.86
CPNE3-201ENST00000517354 PPP2R3AQ06190 1150 aa9.67□□□□□ -0.86
CPNE3-201ENST00000517354 FMR1NBQ8N0W7 255 aaPredicted RBP9.67□□□□□ -0.86
CPNE3-201ENST00000517354 CARD10Q9BWT7 1032 aa9.67□□□□□ -0.86
CPNE3-201ENST00000517354 ZNF576Q9H609 170 aa9.67□□□□□ -0.86
CPNE3-201ENST00000517354 OSGEPQ9NPF4 335 aa9.67□□□□□ -0.86
CPNE3-201ENST00000517354 TTF2Q9UNY4 1162 aaKnown RBP9.67□□□□□ -0.86
CPNE3-201ENST00000517354 E9PSI1 815 aa9.66□□□□□ -0.86
CPNE3-201ENST00000517354 ESRRAP11474 423 aaPredicted RBP9.66□□□□□ -0.86
CPNE3-201ENST00000517354 ZNF157P51786 506 aaPredicted RBP9.66□□□□□ -0.86
CPNE3-201ENST00000517354 SUZ12Q15022 739 aaKnown RBP9.66□□□□□ -0.86
CPNE3-201ENST00000517354 CEP44Q9C0F1 390 aa9.66□□□□□ -0.86
CPNE3-201ENST00000517354 SPATA31C1P0DKV0 1188 aa9.65□□□□□ -0.86
CPNE3-201ENST00000517354 CD68P34810 354 aaPredicted RBP9.65□□□□□ -0.86
CPNE3-201ENST00000517354 SETDB1Q15047 1291 aa9.65□□□□□ -0.86
CPNE3-201ENST00000517354 ZNF423Q2M1K9 1284 aa9.65□□□□□ -0.86
CPNE3-201ENST00000517354 ALYREFQ86V81 257 aaKnown RBP9.65□□□□□ -0.86
CPNE3-201ENST00000517354 ZNF428Q96B54 188 aa9.65□□□□□ -0.86
CPNE3-201ENST00000517354 KLHDC7BQ96G42 594 aa9.65□□□□□ -0.86
CPNE3-201ENST00000517354 ELNP15502 786 aa9.64□□□□□ -0.87
CPNE3-201ENST00000517354 NACC1Q96RE7 527 aa9.64□□□□□ -0.87
CPNE3-201ENST00000517354 TMEM39AQ9NV64 488 aa9.64□□□□□ -0.87
CPNE3-201ENST00000517354 PPM1HQ9ULR3 514 aa9.64□□□□□ -0.87
CPNE3-201ENST00000517354 DEAF1O75398 565 aaPredicted RBP9.63□□□□□ -0.87
CPNE3-201ENST00000517354 TAF1CQ15572 869 aaPredicted RBP9.63□□□□□ -0.87
CPNE3-201ENST00000517354 TPTE2Q6XPS3 522 aa9.63□□□□□ -0.87
CPNE3-201ENST00000517354 MRRFQ96E11 262 aaKnown RBP9.63□□□□□ -0.87
CPNE3-201ENST00000517354 SOX17Q9H6I2 414 aaPredicted RBP9.63□□□□□ -0.87
CPNE3-201ENST00000517354 SAMM50Q9Y512 469 aa9.63□□□□□ -0.87
CPNE3-201ENST00000517354 B3GALT4O96024 378 aa9.62□□□□□ -0.87
CPNE3-201ENST00000517354 CYP11A1P05108 521 aa9.62□□□□□ -0.87
CPNE3-201ENST00000517354 NLRP12P59046 1061 aa9.62□□□□□ -0.87
CPNE3-201ENST00000517354 GRIK4Q16099 956 aa9.62□□□□□ -0.87
CPNE3-201ENST00000517354 IGF2-ASQ6U949 168 aa9.62□□□□□ -0.87
CPNE3-201ENST00000517354 ILDR2Q71H61 639 aa9.62□□□□□ -0.87
CPNE3-201ENST00000517354 C3orf58Q8NDZ4 430 aa9.62□□□□□ -0.87
CPNE3-201ENST00000517354 USP21Q9UK80 565 aa9.62□□□□□ -0.87
CPNE3-201ENST00000517354 DUOXA2Q1HG44 320 aa9.61□□□□□ -0.87
CPNE3-201ENST00000517354 HGSNATQ68CP4 663 aa9.61□□□□□ -0.87
CPNE3-201ENST00000517354 TMEM87AQ8NBN3 555 aa9.61□□□□□ -0.87
CPNE3-201ENST00000517354 GALNT11Q8NCW6 608 aa9.61□□□□□ -0.87
CPNE3-201ENST00000517354 CRELD1Q96HD1 420 aa9.61□□□□□ -0.87
CPNE3-201ENST00000517354 C9orf172C9J069 976 aa9.6□□□□□ -0.87
CPNE3-201ENST00000517354 COL8A1P27658 744 aa9.6□□□□□ -0.87
CPNE3-201ENST00000517354 CCDC85BQ15834 202 aaPredicted RBP9.6□□□□□ -0.87
CPNE3-201ENST00000517354 CORO1BQ9BR76 489 aa9.6□□□□□ -0.87
CPNE3-201ENST00000517354 USP26Q9BXU7 913 aa9.6□□□□□ -0.87
CPNE3-201ENST00000517354 DLL1O00548 723 aa9.59□□□□□ -0.87
CPNE3-201ENST00000517354 DDX3YO15523 660 aaKnown RBP9.59□□□□□ -0.87
CPNE3-201ENST00000517354 FBXO24O75426 580 aa9.59□□□□□ -0.87
CPNE3-201ENST00000517354 LMNB1P20700 586 aa9.59□□□□□ -0.87
CPNE3-201ENST00000517354 FAAP100Q0VG06 881 aa9.59□□□□□ -0.87
CPNE3-201ENST00000517354 AP3B2Q13367 1082 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 209 ms