RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.57	□□□□□ -0.24
CLDND1-231	ENST00000515620	VEZT	Q9HBM0	779 aa		13.57	□□□□□ -0.24
CLDND1-231	ENST00000515620	RBM27	Q9P2N5	1060 aa	Known RBP	13.57	□□□□□ -0.24
CLDND1-231	ENST00000515620	TRIM35	Q9UPQ4	493 aa		13.57	□□□□□ -0.24
CLDND1-231	ENST00000515620	OTOF	Q9HC10	1997 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	TESPA1	A2RU30	521 aa	Predicted RBP	13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	UNCX	A6NJT0	531 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	ARHGEF6	Q15052	776 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	TAF1C	Q15572	869 aa	Predicted RBP	13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	ANKRD13A	Q8IZ07	590 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	SLC17A8	Q8NDX2	589 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	TTLL11	Q8NHH1	800 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	SH3TC2	Q8TF17	1288 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	OPTN	Q96CV9	577 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	METTL22	Q9BUU2	404 aa	Predicted RBP	13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	ELP3	Q9H9T3	547 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	LEMD3	Q9Y2U8	911 aa		13.56	□□□□□ -0.24
CLDND1-231	ENST00000515620	ECM29	Q5VYK3	1845 aa		13.55	□□□□□ -0.24
CLDND1-231	ENST00000515620		F8W031	263 aa	Predicted RBP	13.55	□□□□□ -0.24
CLDND1-231	ENST00000515620	MYO1B	O43795	1136 aa		13.55	□□□□□ -0.24
CLDND1-231	ENST00000515620	USP2	O75604	605 aa	Predicted RBP	13.55	□□□□□ -0.24
CLDND1-231	ENST00000515620	CERS5	Q8N5B7	392 aa		13.55	□□□□□ -0.24
CLDND1-231	ENST00000515620	MTMR14	Q8NCE2	650 aa		13.55	□□□□□ -0.24
CLDND1-231	ENST00000515620	MBIP	Q9NS73	344 aa		13.55	□□□□□ -0.24
CLDND1-231	ENST00000515620	AOX1	Q06278	1338 aa		13.55	□□□□□ -0.24
CLDND1-231	ENST00000515620	SPDYE2B	A6NHP3	402 aa		13.54	□□□□□ -0.24
CLDND1-231	ENST00000515620	SPDYE6	P0CI01	402 aa		13.54	□□□□□ -0.24
CLDND1-231	ENST00000515620	IGHMBP2	P38935	993 aa	Known RBP	13.54	□□□□□ -0.24
CLDND1-231	ENST00000515620	KCNJ4	P48050	445 aa		13.54	□□□□□ -0.24
CLDND1-231	ENST00000515620	CFAP100	Q494V2	611 aa		13.54	□□□□□ -0.24
CLDND1-231	ENST00000515620	BRI3BP	Q8WY22	251 aa		13.54	□□□□□ -0.24
CLDND1-231	ENST00000515620	MS4A4A	Q96JQ5	239 aa		13.54	□□□□□ -0.24
CLDND1-231	ENST00000515620	ZFYVE28	Q9HCC9	887 aa		13.54	□□□□□ -0.24
CLDND1-231	ENST00000515620	RANBP2	P49792	3224 aa	Known RBP	13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	ZSWIM8	A7E2V4	1837 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	MYH3	P11055	1940 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	CCL15-CCL14	A0A0B4J2E2	113 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	ELL2	O00472	640 aa	Predicted RBP	13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	DDX58	O95786	925 aa	Known RBP	13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	RASA3	Q14644	834 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	CCL15	Q16663	113 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	DPF3	Q92784	378 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	SHISA4	Q96DD7	197 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	ARHGAP39	Q9C0H5	1083 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	ANKRD2	Q9GZV1	360 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	CD209	Q9NNX6	404 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	MAP3K2	Q9Y2U5	619 aa		13.53	□□□□□ -0.24
CLDND1-231	ENST00000515620	IGKV5-2	P06315	115 aa		13.52	□□□□□ -0.25
CLDND1-231	ENST00000515620	RBM5	P52756	815 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
CLDND1-231	ENST00000515620	FAM43A	Q8N2R8	423 aa		13.52	□□□□□ -0.25
CLDND1-231	ENST00000515620	PRMT6	Q96LA8	375 aa	Predicted RBP	13.52	□□□□□ -0.25
CLDND1-231	ENST00000515620	GTF2A2	P52657	109 aa		13.51	□□□□□ -0.25
CLDND1-231	ENST00000515620	KIF22	Q14807	665 aa		13.51	□□□□□ -0.25
CLDND1-231	ENST00000515620	UBE3B	Q7Z3V4	1068 aa		13.51	□□□□□ -0.25
CLDND1-231	ENST00000515620	MPHOSPH8	Q99549	860 aa		13.51	□□□□□ -0.25
CLDND1-231	ENST00000515620	JAG2	Q9Y219	1238 aa		13.51	□□□□□ -0.25
CLDND1-231	ENST00000515620	SNAP23	O00161	211 aa		13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	ECM2	O94769	699 aa	Predicted RBP	13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	ITGA6	P23229	1130 aa		13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	LACTB	P83111	547 aa	Predicted RBP	13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	CHRND	Q07001	517 aa		13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	TNFAIP1	Q13829	316 aa		13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	VGLL4	Q14135	290 aa		13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	CWF19L2	Q2TBE0	894 aa	Known RBP	13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	CDAN1	Q8IWY9	1227 aa		13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	RUNDC1	Q96C34	613 aa		13.5	□□□□□ -0.25
CLDND1-231	ENST00000515620	CUL9	Q8IWT3	2517 aa		13.49	□□□□□ -0.25
CLDND1-231	ENST00000515620	NEXN	Q0ZGT2	675 aa		13.49	□□□□□ -0.25
CLDND1-231	ENST00000515620	MTFR1	Q15390	333 aa		13.49	□□□□□ -0.25
CLDND1-231	ENST00000515620	IRS2	Q9Y4H2	1338 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	PI4KAP2	A4QPH2	592 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	NEURL1B	A8MQ27	555 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	TLR2	O60603	784 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	TAF5L	O75529	589 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	WDHD1	O75717	1129 aa	Predicted RBP	13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	ZNF853	P0CG23	659 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	SPDYE2	Q495Y8	402 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	KSR2	Q6VAB6	950 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	ZNF804A	Q7Z570	1209 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	PI4KAP1	Q8N8J0	262 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	HELB	Q8NG08	1087 aa	Predicted RBP	13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	HTATIP2	Q9BUP3	242 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	PRO3102	Q9H379	93 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	ZNF70	Q9UC06	446 aa	Predicted RBP	13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	CSAD	Q9Y600	493 aa		13.48	□□□□□ -0.25
CLDND1-231	ENST00000515620	IL1R1	P14778	569 aa		13.47	□□□□□ -0.25
CLDND1-231	ENST00000515620	WDR43	Q15061	677 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
CLDND1-231	ENST00000515620	CCDC30	Q5VVM6	783 aa		13.47	□□□□□ -0.25
CLDND1-231	ENST00000515620	C8orf58	Q8NAV2	365 aa		13.47	□□□□□ -0.25
CLDND1-231	ENST00000515620	TEPSIN	Q96N21	525 aa		13.47	□□□□□ -0.25
CLDND1-231	ENST00000515620	IFT57	Q9NWB7	429 aa		13.47	□□□□□ -0.25
CLDND1-231	ENST00000515620	TCP10L2	B9ZVM9	353 aa		13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620		H7C1W4	665 aa		13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	SOX1	O00570	391 aa	Predicted RBP	13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	GNRH1	P01148	92 aa		13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	CETP	P11597	493 aa		13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	PRMT2	P55345	433 aa		13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	FKBP1A	P62942	108 aa	Known RBP	13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	MAP3K9	P80192	1104 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms