RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 UTP14AQ9BVJ6 771 aaKnown RBP14.47□□□□□ -0.09
USP53-209ENST00000514665 AOX1Q06278 1338 aa14.47□□□□□ -0.09
USP53-209ENST00000514665 NLRP3Q96P20 1036 aa14.47□□□□□ -0.09
USP53-209ENST00000514665 ERVK-7P63135 1459 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 KIAA0232Q92628 1395 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 PLEKHG3A1L390 1219 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 BMP15O95972 392 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 SEPT7Q16181 437 aaKnown RBP14.46□□□□□ -0.09
USP53-209ENST00000514665 PLBD2Q8NHP8 589 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 PLIN2Q99541 437 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 EXOC1Q9NV70 894 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 USP8P40818 1118 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 SPECC1Q5M775 1068 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 UNC5CLQ8IV45 518 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 HELLSQ9NRZ9 838 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 BCCIPQ9P287 314 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP53-209ENST00000514665 MAGEB6P1A0A0J9YX57 407 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 F8W031 263 aaPredicted RBP14.46□□□□□ -0.09
USP53-209ENST00000514665 ASIC1P78348 528 aa14.46□□□□□ -0.09
USP53-209ENST00000514665 SPAG1Q07617 926 aa14.46□□□□□ -0.1
USP53-209ENST00000514665 PRPF4BQ13523 1007 aaKnown RBP14.46□□□□□ -0.1
USP53-209ENST00000514665 TSC1Q92574 1164 aa14.46□□□□□ -0.1
USP53-209ENST00000514665 PYM1Q9BRP8 204 aaKnown RBP14.46□□□□□ -0.1
USP53-209ENST00000514665 MYL10Q9BUA6 226 aa14.46□□□□□ -0.1
USP53-209ENST00000514665 CALCOCO1Q9P1Z2 691 aa14.46□□□□□ -0.1
USP53-209ENST00000514665 KDM5CP41229 1560 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 MACROD2A1Z1Q3 448 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 ANKRD62A6NC57 917 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 PSMA7O14818 248 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 GPAA1O43292 621 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 IBSPP21815 317 aaPredicted RBP14.45□□□□□ -0.1
USP53-209ENST00000514665 PHF23Q9BUL5 403 aaPredicted RBP14.45□□□□□ -0.1
USP53-209ENST00000514665 CABP5Q9NP86 173 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 MCM9Q9NXL9 1143 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 ATP10AO60312 1499 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 KIF20AO95235 890 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 MYL5Q02045 173 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 SLF2Q8IX21 1173 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 XAGE2Q96GT9 111 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 RMND1Q9NWS8 449 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 A0A0D9SFI3 127 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 SHTN1A0MZ66 631 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 PRDM1O75626 825 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 CCDC175P0C221 793 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 HSPA2P54652 639 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 KRI1Q8N9T8 703 aaKnown RBP14.45□□□□□ -0.1
USP53-209ENST00000514665 ALS2CR12Q96Q35 445 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 SEC62Q99442 399 aaKnown RBP14.45□□□□□ -0.1
USP53-209ENST00000514665 CLSTN2Q9H4D0 955 aa14.45□□□□□ -0.1
USP53-209ENST00000514665 MCM3P25205 808 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 MCM7P33993 719 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 RFC4P35249 363 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 CTR9Q6PD62 1173 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 CNKSR2Q8WXI2 1034 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 CTAGE15A4D2H0 777 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 CTAGE8P0CG41 777 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 LTKP29376 864 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 IFFO1Q0D2I5 559 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 ANO1Q5XXA6 986 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 CTAGE6Q86UF2 777 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 CTAGE4Q8IX94 777 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 CTAGE1Q96RT6 745 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 SETDB2Q96T68 719 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 RIOK3O14730 519 aaKnown RBP14.44□□□□□ -0.1
USP53-209ENST00000514665 FAM114A1Q8IWE2 563 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 RASEFQ8IZ41 740 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 PHKBQ93100 1093 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 MMRN2Q9H8L6 949 aa14.44□□□□□ -0.1
USP53-209ENST00000514665 ITGA6P23229 1130 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 NAPAP54920 295 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 SIRT2Q8IXJ6 389 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 GPT2Q8TD30 523 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 APPBP2Q92624 585 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 DDX17Q92841 729 aaKnown RBP14.43□□□□□ -0.1
USP53-209ENST00000514665 SPAG5Q96R06 1193 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 PUF60Q9UHX1 559 aaKnown RBP14.43□□□□□ -0.1
USP53-209ENST00000514665 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.43□□□□□ -0.1
USP53-209ENST00000514665 VWA3AA6NCI4 1184 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 GIGYF1O75420 1035 aaPredicted RBP14.43□□□□□ -0.1
USP53-209ENST00000514665 DDB1Q16531 1140 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 GOPCQ9HD26 462 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 ANGEL1Q9UNK9 670 aaKnown RBP14.43□□□□□ -0.1
USP53-209ENST00000514665 POTEB2H3BUK9 544 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 CUL5Q93034 780 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 PLCD4Q9BRC7 762 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 SLC52A2Q9HAB3 445 aa14.43□□□□□ -0.1
USP53-209ENST00000514665 CYLC1P35663 651 aaPredicted RBP14.42□□□□□ -0.1
USP53-209ENST00000514665 ZNF174Q15697 407 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 FAM107BQ9H098 131 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 ANTXR1Q9H6X2 564 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 ZNF75DP51815 510 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 ARID5AQ03989 594 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 TM6SF1Q9BZW5 370 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 ARMT1Q9H993 441 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 GUCA1BQ9UMX6 200 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 PHACTR2O75167 634 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 DYDC1Q8WWB3 177 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 NSFL1CQ9UNZ2 370 aaKnown RBP14.42□□□□□ -0.1
USP53-209ENST00000514665 UGGT1Q9NYU2 1555 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 U2AF2P26368 475 aaKnown RBP eCLIP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms