RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 PTH1RQ03431 593 aa19.17■□□□□ 0.66
NUP54-214ENST00000514307 DPP8Q6V1X1 898 aaPredicted RBP19.17■□□□□ 0.66
NUP54-214ENST00000514307 HSCBQ8IWL3 235 aa19.17■□□□□ 0.66
NUP54-214ENST00000514307 DSCC1Q9BVC3 393 aa19.17■□□□□ 0.66
NUP54-214ENST00000514307 NECTIN1Q15223 517 aa19.16■□□□□ 0.66
NUP54-214ENST00000514307 TDRD7Q8NHU6 1098 aaKnown RBP19.16■□□□□ 0.66
NUP54-214ENST00000514307 IL25Q9H293 177 aa19.16■□□□□ 0.66
NUP54-214ENST00000514307 ABCF2Q9UG63 623 aa19.16■□□□□ 0.66
NUP54-214ENST00000514307 RBM8AQ9Y5S9 174 aaKnown RBP19.16■□□□□ 0.66
NUP54-214ENST00000514307 G3V3G9 751 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 PDE6AP16499 860 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 PSMA5P28066 241 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 MCM2P49736 904 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 DCAF8Q5TAQ9 597 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 ERICH6Q7L0X2 663 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 KCNB2Q92953 911 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 PDGFDQ9GZP0 370 aaPredicted RBP19.15■□□□□ 0.66
NUP54-214ENST00000514307 RAI14Q9P0K7 980 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 IQSEC3Q9UPP2 1182 aaPredicted RBP19.15■□□□□ 0.66
NUP54-214ENST00000514307 MED23Q9ULK4 1368 aa19.15■□□□□ 0.66
NUP54-214ENST00000514307 SPEF2Q9C093 1822 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 TGFB2P61812 414 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 KRT32Q14532 448 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 SUPT20HQ8NEM7 779 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 OSBP2Q969R2 916 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 SEC62Q99442 399 aaKnown RBP19.14■□□□□ 0.65
NUP54-214ENST00000514307 COA1Q9GZY4 146 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 CD209Q9NNX6 404 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 POLLQ9UGP5 575 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 ZNF532Q9HCE3 1301 aa19.14■□□□□ 0.65
NUP54-214ENST00000514307 GNAT2P19087 354 aa19.13■□□□□ 0.65
NUP54-214ENST00000514307 TSGA10IPQ3SY00 556 aa19.13■□□□□ 0.65
NUP54-214ENST00000514307 CREB3L3Q68CJ9 461 aa19.13■□□□□ 0.65
NUP54-214ENST00000514307 PRPF40BQ6NWY9 871 aaKnown RBP19.13■□□□□ 0.65
NUP54-214ENST00000514307 ZNF589Q86UQ0 364 aaPredicted RBP19.13■□□□□ 0.65
NUP54-214ENST00000514307 MAGEB6Q8N7X4 407 aa19.13■□□□□ 0.65
NUP54-214ENST00000514307 TTLL6Q8N841 843 aa19.13■□□□□ 0.65
NUP54-214ENST00000514307 TM6SF1Q9BZW5 370 aa19.13■□□□□ 0.65
NUP54-214ENST00000514307 SNX14Q9Y5W7 946 aa19.13■□□□□ 0.65
NUP54-214ENST00000514307 IRS2Q9Y4H2 1338 aa19.13■□□□□ 0.65
NUP54-214ENST00000514307 QSER1Q2KHR3 1735 aa19.12■□□□□ 0.65
NUP54-214ENST00000514307 NRXN2Q9P2S2 1712 aa19.12■□□□□ 0.65
NUP54-214ENST00000514307 ZBTB7AO95365 584 aa19.12■□□□□ 0.65
NUP54-214ENST00000514307 IL1R1P14778 569 aa19.12■□□□□ 0.65
NUP54-214ENST00000514307 CHRNA5P30532 468 aa19.12■□□□□ 0.65
NUP54-214ENST00000514307 NEK4P51957 841 aa19.12■□□□□ 0.65
NUP54-214ENST00000514307 TXNRD3Q86VQ6 643 aa19.12■□□□□ 0.65
NUP54-214ENST00000514307 AIDAQ96BJ3 306 aa19.12■□□□□ 0.65
NUP54-214ENST00000514307 ATF5Q9Y2D1 282 aaPredicted RBP19.12■□□□□ 0.65
NUP54-214ENST00000514307 TNRC6CQ9HCJ0 1690 aaKnown RBP19.11■□□□□ 0.65
NUP54-214ENST00000514307 MAST3O60307 1309 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 SALL1Q9NSC2 1324 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 TCRBV5S4A2TA0A5A2 114 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 LDHCP07864 332 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 HSPD1P10809 573 aaKnown RBP19.11■□□□□ 0.65
NUP54-214ENST00000514307 CYP7A1P22680 504 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 KLRK1P26718 216 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 GSTO1P78417 241 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 CHAF1AQ13111 956 aaPredicted RBP19.11■□□□□ 0.65
NUP54-214ENST00000514307 CCDC129Q6ZRS4 1044 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 TBC1D22AQ8WUA7 517 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 TBC1D2Q9BYX2 928 aa19.11■□□□□ 0.65
NUP54-214ENST00000514307 PUS7LQ9H0K6 701 aaKnown RBP19.11■□□□□ 0.65
NUP54-214ENST00000514307 M0R2C6 588 aa19.1■□□□□ 0.65
NUP54-214ENST00000514307 SLC27A2O14975 620 aa19.1■□□□□ 0.65
NUP54-214ENST00000514307 GPAA1O43292 621 aa19.1■□□□□ 0.65
NUP54-214ENST00000514307 SOGA3Q5TF21 947 aa19.1■□□□□ 0.65
NUP54-214ENST00000514307 NAA16Q6N069 864 aaPredicted RBP19.1■□□□□ 0.65
NUP54-214ENST00000514307 RTKN2Q8IZC4 609 aa19.1■□□□□ 0.65
NUP54-214ENST00000514307 WWC3Q9ULE0 1092 aa19.1■□□□□ 0.65
NUP54-214ENST00000514307 PATL2C9JE40 543 aaKnown RBP19.09■□□□□ 0.65
NUP54-214ENST00000514307 APPP05067 770 aa19.09■□□□□ 0.65
NUP54-214ENST00000514307 LDHBP07195 334 aaKnown RBP19.09■□□□□ 0.65
NUP54-214ENST00000514307 SLF2Q8IX21 1173 aa19.09■□□□□ 0.65
NUP54-214ENST00000514307 STRBPQ96SI9 672 aaKnown RBP19.09■□□□□ 0.65
NUP54-214ENST00000514307 NACAP1Q9BZK3 213 aa19.09■□□□□ 0.65
NUP54-214ENST00000514307 PALD1Q9ULE6 856 aa19.09■□□□□ 0.65
NUP54-214ENST00000514307 CYP46A1Q9Y6A2 500 aa19.09■□□□□ 0.65
NUP54-214ENST00000514307 RIMBP2O15034 1052 aa19.08■□□□□ 0.64
NUP54-214ENST00000514307 CHGBP05060 677 aa19.08■□□□□ 0.64
NUP54-214ENST00000514307 HMGB1P09429 215 aaKnown RBP19.08■□□□□ 0.64
NUP54-214ENST00000514307 ALX1Q15699 326 aa19.08■□□□□ 0.64
NUP54-214ENST00000514307 SLFNL1Q499Z3 407 aa19.08■□□□□ 0.64
NUP54-214ENST00000514307 C7orf43Q8WVR3 580 aa19.08■□□□□ 0.64
NUP54-214ENST00000514307 RTFDC1Q9BY42 306 aaPredicted RBP19.08■□□□□ 0.64
NUP54-214ENST00000514307 PIM2Q9P1W9 311 aa19.08■□□□□ 0.64
NUP54-214ENST00000514307 COL4A1P02462 1669 aa19.08■□□□□ 0.64
NUP54-214ENST00000514307 RPAP1Q9BWH6 1393 aaPredicted RBP19.07■□□□□ 0.64
NUP54-214ENST00000514307 A0A0G2JLW4 131 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 MAGEB6P1A0A0J9YX57 407 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 DPEP1P16444 411 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 IMMTQ16891 758 aaKnown RBP19.07■□□□□ 0.64
NUP54-214ENST00000514307 PODNQ7Z5L7 613 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 CERS3Q8IU89 383 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 RASEFQ8IZ41 740 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 VPS33BQ9H267 617 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 ZSWIM6Q9HCJ5 1215 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 SUGT1Q9Y2Z0 365 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 CD2APQ9Y5K6 639 aa19.07■□□□□ 0.64
NUP54-214ENST00000514307 FAM205AQ6ZU69 1335 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms