RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 CWC25Q9NXE8 425 aaPredicted RBP8.82□□□□□ -1
CLIP1-205ENST00000514271 RIOK3O14730 519 aaKnown RBP8.81□□□□□ -1
CLIP1-205ENST00000514271 MMP10P09238 476 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 NECTIN1Q15223 517 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 KIF18AQ8NI77 898 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 ZSWIM6Q9HCJ5 1215 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 ZSCAN22P10073 491 aaPredicted RBP8.81□□□□□ -1
CLIP1-205ENST00000514271 MYL6BP14649 208 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 OGFRQ9NZT2 677 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 REC8O95072 547 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 ADCY5O95622 1261 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 NIP7Q9Y221 180 aaKnown RBP eCLIP8.81□□□□□ -1
CLIP1-205ENST00000514271 SH3TC1Q8TE82 1336 aa8.81□□□□□ -1
CLIP1-205ENST00000514271 PRAMEF22A3QJZ6 481 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 PSDA5PKW4 1024 aaPredicted RBP8.8□□□□□ -1
CLIP1-205ENST00000514271 NBPF5PQ86XG9 351 aaPredicted RBP8.8□□□□□ -1
CLIP1-205ENST00000514271 TSC1Q92574 1164 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 CNKSR1Q969H4 720 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 VPS33BQ9H267 617 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 PNMA6EA0A0J9YXQ4 647 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 ST18O60284 1047 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 ALDH1B1P30837 517 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 NLRP10Q86W26 655 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 RASEFQ8IZ41 740 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 ZBTB38Q8NAP3 1195 aaPredicted RBP8.8□□□□□ -1
CLIP1-205ENST00000514271 HSD3B7Q9H2F3 369 aa8.8□□□□□ -1
CLIP1-205ENST00000514271 NTSR2O95665 410 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 F13A1P00488 732 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 CCZ1BP86790 482 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 CCZ1P86791 482 aaPredicted RBP8.79□□□□□ -1
CLIP1-205ENST00000514271 TTLL7Q6ZT98 887 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 NBPF11Q86T75 865 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 FBXL16Q8N461 479 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 CRAMP1Q96RY5 1269 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 ZNF219Q9P2Y4 722 aaPredicted RBP8.79□□□□□ -1
CLIP1-205ENST00000514271 MYH2Q9UKX2 1941 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 TBC1D2BQ9UPU7 963 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 NPR1P16066 1061 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 TBC1D9BQ66K14 1250 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 CREBRFQ8IUR6 639 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 AGXT2Q9BYV1 514 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 GOLGA6L22H0YM25 854 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 GRIN3BO60391 1043 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 CAPN2P17655 700 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 HOXA10P31260 410 aaPredicted RBP8.79□□□□□ -1
CLIP1-205ENST00000514271 KCNQ4P56696 695 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 SETQ01105 290 aaPredicted RBP8.79□□□□□ -1
CLIP1-205ENST00000514271 TERF2Q15554 542 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 TMX1Q9H3N1 280 aa8.79□□□□□ -1
CLIP1-205ENST00000514271 SRP68Q9UHB9 627 aaKnown RBP8.79□□□□□ -1
CLIP1-205ENST00000514271 COL11A2P13942 1736 aaPredicted RBP8.79□□□□□ -1
CLIP1-205ENST00000514271 WDR33Q9C0J8 1336 aaKnown RBP8.78□□□□□ -1
CLIP1-205ENST00000514271 ZC3H4Q9UPT8 1303 aaKnown RBP8.78□□□□□ -1
CLIP1-205ENST00000514271 ZBTB7AO95365 584 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 DDR1Q08345 913 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 SF3B3Q15393 1217 aaKnown RBP8.78□□□□□ -1
CLIP1-205ENST00000514271 MAP3K2Q9Y2U5 619 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 SMTNL1A8MU46 457 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 H0YIN7 160 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 GNAI3P08754 354 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 SYT1P21579 422 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 PROSER3Q2NL68 480 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 CRY2Q49AN0 593 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 G2E3Q7L622 706 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 C17orf53Q8N3J3 647 aaPredicted RBP8.78□□□□□ -1
CLIP1-205ENST00000514271 MASTLQ96GX5 879 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 RBM17Q96I25 401 aaKnown RBP8.78□□□□□ -1
CLIP1-205ENST00000514271 NLRP3Q96P20 1036 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 PDE8AO60658 829 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 PRR5LQ6MZQ0 368 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 MSL3Q8N5Y2 521 aaKnown RBP8.78□□□□□ -1
CLIP1-205ENST00000514271 ENGASEQ8NFI3 743 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 USP44Q9H0E7 712 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 FAM13BQ9NYF5 915 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 FHOD1Q9Y613 1164 aa8.78□□□□□ -1
CLIP1-205ENST00000514271 LTBP3Q9NS15 1303 aa8.77□□□□□ -1
CLIP1-205ENST00000514271 NEURL1BA8MQ27 555 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 TPM3P06753 285 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 TMX4Q9H1E5 349 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-205ENST00000514271 ZBTB3Q9H5J0 574 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 TTC12Q9H892 705 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-205ENST00000514271 ZNF330Q9Y3S2 320 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-205ENST00000514271 KIF3AQ9Y496 699 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 PI4KAP2A4QPH2 592 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 H7C1W4 665 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 NPHP1O15259 732 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 SNW1Q13573 536 aaKnown RBP8.77□□□□□ -1.01
CLIP1-205ENST00000514271 BEND3Q5T5X7 828 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 VPS53Q5VIR6 699 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 PI4KAP1Q8N8J0 262 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 CNPY2Q9Y2B0 182 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 CCDC144BQ3MJ40 725 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 KMT5BQ4FZB7 885 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 CCDC144CPQ8IYA2 1237 aa8.77□□□□□ -1.01
CLIP1-205ENST00000514271 ATF5Q9Y2D1 282 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-205ENST00000514271 TNRC6CQ9HCJ0 1690 aaKnown RBP8.76□□□□□ -1.01
CLIP1-205ENST00000514271 GCKRQ14397 625 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 HLFQ16534 295 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 CCDC152Q4G0S7 254 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 TAF3Q5VWG9 929 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms