RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, human

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM3-209	ENST00000514142	CCDC63	Q8NA47	563 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	VPS16	Q9H269	839 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CWC25	Q9NXE8	425 aa	Predicted RBP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ANKIB1	Q9P2G1	1089 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	GOLGA6B	A6NDN3	693 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ATP11A	P98196	1134 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ERCC6L	Q2NKX8	1250 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	IFIT1B	Q5T764	474 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	GDAP1L1	Q96MZ0	367 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	COMMD10	Q9Y6G5	202 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SCAF11	Q99590	1463 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	NSD2	O96028	1365 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	LONRF3	Q496Y0	759 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	UTP14C	Q5TAP6	766 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CCDC174	Q6PII3	467 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	DHX32	Q7L7V1	743 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CABS1	Q96KC9	395 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PLIN2	Q99541	437 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ATP2A1	O14983	1001 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	VAMP4	O75379	141 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ZFY	P08048	801 aa	Predicted RBP	11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PLCB3	Q01970	1234 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PSMD1	Q99460	953 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	MRVI1	Q9Y6F6	885 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CCDC141	Q6ZP82	1450 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SEPT6	Q14141	434 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	HEATR3	Q7Z4Q2	680 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TMTC2	Q8N394	836 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	STMN2	Q93045	179 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	IFT74	Q96LB3	600 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	FEZ2	Q9UHY8	353 aa	Predicted RBP	11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ELP1	O95163	1332 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	LMNTD2	Q8IXW0	634 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TMOD3	Q9NYL9	352 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TTF2	Q9UNY4	1162 aa	Known RBP	11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	GAS2L3	Q86XJ1	694 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	WDR66	Q8TBY9	1149 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ESR2	Q92731	530 aa		11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ZNF215	Q9UL58	517 aa	Predicted RBP	11.69	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ARHGAP25	P42331	645 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	MKRN1	Q9UHC7	482 aa	Known RBP	11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SAMM50	Q9Y512	469 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	HECW1	Q76N89	1606 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TTC41P	Q6P2S7	1318 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TTC21A	Q8NDW8	1320 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	BICDL2	A1A5D9	508 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CALCOCO2	Q13137	446 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PPP1R7	Q15435	360 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	KRT24	Q2M2I5	525 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	EEF2	P13639	858 aa	Known RBP	11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ANKRD13D	Q6ZTN6	518 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CCDC50	Q8IVM0	306 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	NKIRAS1	Q9NYS0	192 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TMOD2	Q9NZR1	351 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SLC4A4	Q9Y6R1	1079 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	MCM7	P33993	719 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	LRMP	Q12912	555 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SF3B2	Q13435	895 aa	Known RBP	11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SLC9C2	Q5TAH2	1124 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TRIM7	Q9C029	511 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CNNM2	Q9H8M5	875 aa		11.68	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CAMSAP2	Q08AD1	1489 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	RALGAPB	Q86X10	1494 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ARHGAP6	O43182	974 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	DNMBP	Q6XZF7	1577 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	MIPOL1	Q8TD10	442 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TSGA10	Q9BZW7	698 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ARID4A	P29374	1257 aa	Predicted RBP	11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TUBB2A	Q13885	445 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	IQUB	Q8NA54	791 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	LEO1	Q8WVC0	666 aa	Predicted RBP	11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TUBB2B	Q9BVA1	445 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PAG1	Q9NWQ8	432 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	IMPACT	Q9P2X3	320 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	BAIAP2L1	Q9UHR4	511 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CTNND2	Q9UQB3	1225 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	GRM8	O00222	908 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	WASL	O00401	505 aa	Predicted RBP	11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SREK1	Q8WXA9	508 aa	Known RBP	11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PSMB7	Q99436	277 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ZBTB7B	O15156	539 aa	Predicted RBP	11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ALDH3A1	P30838	453 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TBC1D8B	Q0IIM8	1120 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ATL3	Q6DD88	541 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CYP26C1	Q6V0L0	522 aa		11.67	□□□□□ -0.54
PDLIM3-209	ENST00000514142	EPRS	P07814	1512 aa	Known RBP	11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	LMBR1L	Q6UX01	489 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TTC16	Q8NEE8	873 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CFAP57	Q96MR6	1250 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ATP6V0A2	Q9Y487	856 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SNAPC4	Q5SXM2	1469 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TTC21B	Q7Z4L5	1316 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PSMC4	P43686	418 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	DMTN	Q08495	405 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	MTX1	Q13505	466 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CCDC26	Q8TAB7	109 aa		11.66	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ERMN	Q8TAM6	284 aa		11.66	□□□□□ -0.54

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