RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 BCAMP50895 628 aa17.78■□□□□ 0.44
VCAN-211ENST00000513984 NFIXQ14938 502 aa17.78■□□□□ 0.44
VCAN-211ENST00000513984 TCEANC2Q96MN5 208 aa17.78■□□□□ 0.44
VCAN-211ENST00000513984 RPS8P62241 208 aaKnown RBP17.77■□□□□ 0.44
VCAN-211ENST00000513984 SKOR2Q2VWA4 1001 aaPredicted RBP17.77■□□□□ 0.44
VCAN-211ENST00000513984 WWC3Q9ULE0 1092 aa17.77■□□□□ 0.44
VCAN-211ENST00000513984 SMC3Q9UQE7 1217 aa17.77■□□□□ 0.44
VCAN-211ENST00000513984 WDR33Q9C0J8 1336 aaKnown RBP17.77■□□□□ 0.43
VCAN-211ENST00000513984 ZNF532Q9HCE3 1301 aa17.77■□□□□ 0.43
VCAN-211ENST00000513984 RBM6P78332 1123 aaKnown RBP17.77■□□□□ 0.43
VCAN-211ENST00000513984 ZNF772Q68DY9 489 aaPredicted RBP17.77■□□□□ 0.43
VCAN-211ENST00000513984 A0A0G2JLW4 131 aa17.76■□□□□ 0.43
VCAN-211ENST00000513984 E7EWF7 191 aa17.76■□□□□ 0.43
VCAN-211ENST00000513984 HMGB2P26583 209 aaKnown RBP17.76■□□□□ 0.43
VCAN-211ENST00000513984 TM4SF1P30408 202 aa17.76■□□□□ 0.43
VCAN-211ENST00000513984 MAP3K12Q12852 859 aa17.76■□□□□ 0.43
VCAN-211ENST00000513984 DHX32Q7L7V1 743 aaKnown RBP17.76■□□□□ 0.43
VCAN-211ENST00000513984 FGAP02671 866 aa17.75■□□□□ 0.43
VCAN-211ENST00000513984 TTLL5Q6EMB2 1281 aa17.75■□□□□ 0.43
VCAN-211ENST00000513984 CACNA1SQ13698 1873 aa17.75■□□□□ 0.43
VCAN-211ENST00000513984 GYS1P13807 737 aa17.75■□□□□ 0.43
VCAN-211ENST00000513984 EXOSC10Q01780 885 aaKnown RBP17.75■□□□□ 0.43
VCAN-211ENST00000513984 IMMTQ16891 758 aaKnown RBP17.75■□□□□ 0.43
VCAN-211ENST00000513984 MCTP1Q6DN14 999 aa17.75■□□□□ 0.43
VCAN-211ENST00000513984 Q6ZUG5 572 aa17.75■□□□□ 0.43
VCAN-211ENST00000513984 CNBD1Q8NA66 436 aa17.75■□□□□ 0.43
VCAN-211ENST00000513984 AGXT2Q9BYV1 514 aa17.75■□□□□ 0.43
VCAN-211ENST00000513984 COL1A1P02452 1464 aaPredicted RBP17.74■□□□□ 0.43
VCAN-211ENST00000513984 GJB2P29033 226 aa17.74■□□□□ 0.43
VCAN-211ENST00000513984 CCDC24Q8N4L8 307 aa17.74■□□□□ 0.43
VCAN-211ENST00000513984 NECAB1Q8N987 351 aa17.74■□□□□ 0.43
VCAN-211ENST00000513984 ANKRD2Q9GZV1 360 aa17.74■□□□□ 0.43
VCAN-211ENST00000513984 GNL3LQ9NVN8 582 aaKnown RBP17.74■□□□□ 0.43
VCAN-211ENST00000513984 CCDC88AQ3V6T2 1871 aa17.73■□□□□ 0.43
VCAN-211ENST00000513984 SYT1P21579 422 aa17.73■□□□□ 0.43
VCAN-211ENST00000513984 MAST2Q6P0Q8 1798 aa17.73■□□□□ 0.43
VCAN-211ENST00000513984 ZMYM6O95789 1325 aa17.73■□□□□ 0.43
VCAN-211ENST00000513984 RGPD3A6NKT7 1758 aaPredicted RBP17.72■□□□□ 0.43
VCAN-211ENST00000513984 RGPD4Q7Z3J3 1758 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 NPHP1O15259 732 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 STX6O43752 255 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 GYG1P46976 350 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 TXNRD1Q16881 649 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 CAVIN4Q5BKX8 364 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 FBXL16Q8N461 479 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 MAGEB6Q8N7X4 407 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 LMBRD1Q9NUN5 540 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 TIAM2Q8IVF5 1701 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 FOXD4L5Q5VV16 416 aaPredicted RBP17.72■□□□□ 0.43
VCAN-211ENST00000513984 PRR5LQ6MZQ0 368 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 PROM2Q8N271 834 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 FOXD4L4Q8WXT5 416 aaPredicted RBP17.72■□□□□ 0.43
VCAN-211ENST00000513984 GTF3C6Q969F1 213 aa17.72■□□□□ 0.43
VCAN-211ENST00000513984 FAM84BQ96KN1 310 aaPredicted RBP17.72■□□□□ 0.43
VCAN-211ENST00000513984 STRBPQ96SI9 672 aaKnown RBP17.72■□□□□ 0.43
VCAN-211ENST00000513984 TNS1Q9HBL0 1735 aaKnown RBP17.72■□□□□ 0.43
VCAN-211ENST00000513984 KIAA1551Q9HCM1 1747 aa17.71■□□□□ 0.43
VCAN-211ENST00000513984 WTIPA6NIX2 430 aaPredicted RBP17.71■□□□□ 0.43
VCAN-211ENST00000513984 ZBTB22O15209 634 aa17.71■□□□□ 0.43
VCAN-211ENST00000513984 ZSCAN22P10073 491 aaPredicted RBP17.71■□□□□ 0.43
VCAN-211ENST00000513984 PDIA4P13667 645 aaKnown RBP17.71■□□□□ 0.43
VCAN-211ENST00000513984 ALX1Q15699 326 aa17.71■□□□□ 0.43
VCAN-211ENST00000513984 FBXO33Q7Z6M2 555 aa17.71■□□□□ 0.43
VCAN-211ENST00000513984 BRF1Q92994 677 aa17.71■□□□□ 0.43
VCAN-211ENST00000513984 AIDAQ96BJ3 306 aa17.71■□□□□ 0.43
VCAN-211ENST00000513984 PDS5AQ29RF7 1337 aaKnown RBP17.71■□□□□ 0.43
VCAN-211ENST00000513984 SEMA3EO15041 775 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 KLHL40Q2TBA0 621 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 DENND2AQ9ULE3 1009 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 NRXN2Q9P2S2 1712 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 ZNF213O14771 459 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 PLSCR1O15162 318 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 HAND2P61296 217 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 GRAPQ13588 217 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 GRAPLQ8TC17 118 aaPredicted RBP17.7■□□□□ 0.42
VCAN-211ENST00000513984 LRRC2Q9BYS8 371 aa17.7■□□□□ 0.42
VCAN-211ENST00000513984 PNPLA7Q6ZV29 1317 aa17.69■□□□□ 0.42
VCAN-211ENST00000513984 ANKRD31Q8N7Z5 1873 aa17.69■□□□□ 0.42
VCAN-211ENST00000513984 MBD4O95243 580 aa17.69■□□□□ 0.42
VCAN-211ENST00000513984 FGD1P98174 961 aa17.69■□□□□ 0.42
VCAN-211ENST00000513984 MB21D2Q8IYB1 491 aaPredicted RBP17.69■□□□□ 0.42
VCAN-211ENST00000513984 LRP2BPQ9P2M1 347 aa17.69■□□□□ 0.42
VCAN-211ENST00000513984 WDR19Q8NEZ3 1342 aa17.69■□□□□ 0.42
VCAN-211ENST00000513984 PFKFB2O60825 505 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 CRY2Q49AN0 593 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 VPS37DQ86XT2 251 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 NCOA7Q8NI08 942 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 NBPF3Q9H094 633 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 IQSEC3Q9UPP2 1182 aaPredicted RBP17.68■□□□□ 0.42
VCAN-211ENST00000513984 LRRC37AA6NMS7 1700 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 IRS2Q9Y4H2 1338 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 PATL2C9JE40 543 aaKnown RBP17.68■□□□□ 0.42
VCAN-211ENST00000513984 F13A1P00488 732 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 SERPINB2P05120 415 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 GNAT2P19087 354 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 EVCP57679 992 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 ST5P78524 1137 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 STK3Q13188 491 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 CHAMP1Q96JM3 812 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 GZF1Q9H116 711 aaPredicted RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms