RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 RTN1Q16799 776 aa9.65□□□□□ -0.87
LIMCH1-216ENST00000512820 PLBD2Q8NHP8 589 aa9.65□□□□□ -0.87
LIMCH1-216ENST00000512820 TRIM34Q9BYJ4 488 aa9.65□□□□□ -0.87
LIMCH1-216ENST00000512820 E7EWF7 191 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 N4BP3O15049 544 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 LMAN1P49257 510 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 TANGO6Q9C0B7 1094 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 LMTK2Q8IWU2 1503 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 PFKFB2O60825 505 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 NLRP5P59047 1200 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 NECTIN1Q15223 517 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 LRRC8AQ8IWT6 810 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 KRT23Q9C075 422 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 ZNF589Q86UQ0 364 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 MRFAP1L1Q96HT8 127 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 ZNF496Q96IT1 587 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 ZNF594Q96JF6 807 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 DSCC1Q9BVC3 393 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 TEX13AQ9BXU3 409 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 SLC52A2Q9HAB3 445 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 NLRP12P59046 1061 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 SOGA3Q5TF21 947 aa9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 ZCRB1Q8TBF4 217 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-216ENST00000512820 CCDC175P0C221 793 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 KARSQ15046 597 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 TTC14Q96N46 770 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 XPO4Q9C0E2 1151 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 CNNM2Q9H8M5 875 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 GABPB1Q06547 395 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 MAP9Q49MG5 647 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 ADALQ6DHV7 355 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 SCRN1Q12765 414 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 KRI1Q8N9T8 703 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 DHX58Q96C10 678 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 BAG1Q99933 345 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 ZNF215Q9UL58 517 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 MCM6Q14566 821 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 SPA17Q15506 151 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 TMTC2Q8N394 836 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 CABLES1Q8TDN4 633 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 TSPYL1Q9H0U9 437 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 LUC7LQ9NQ29 371 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 KIAA1468Q9P260 1216 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 NRXN1Q9ULB1 1477 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 KIAA1210Q9ULL0 1709 aa9.63□□□□□ -0.87
LIMCH1-216ENST00000512820 CDR1P51861 262 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 EVCP57679 992 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 KLHL34Q8N239 644 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 CACTINQ8WUQ7 758 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 GOLGA1Q92805 767 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 CTAGE1Q96RT6 745 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 PPRC1Q5VV67 1664 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 TXLNBQ8N3L3 684 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 DBNLQ9UJU6 430 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 SLC4A4Q9Y6R1 1079 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 MCM3P25205 808 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 STX17P56962 302 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 CAVIN4Q5BKX8 364 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 RRAGBQ5VZM2 374 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 APPBP2Q92624 585 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 ZNF274Q96GC6 653 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 ORAI2Q96SN7 254 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 HAUS7Q99871 368 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 LZTFL1Q9NQ48 299 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 KCNH3Q9ULD8 1083 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 CYP21A2P08686 494 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 MYSM1Q5VVJ2 828 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 XAGE2Q96GT9 111 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 ATP10DQ9P241 1426 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 ALKQ9UM73 1620 aa9.62□□□□□ -0.87
LIMCH1-216ENST00000512820 TRIM75PA6NK02 468 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 B4E1Z4 1266 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 PCDHA7Q9UN72 937 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 ANGEL1Q9UNK9 670 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 PRAMEF22A3QJZ6 481 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 CTAGE15A4D2H0 777 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 GPAA1O43292 621 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 SASH1O94885 1247 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 KRT18P05783 430 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 CTAGE8P0CG41 777 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 FKBP15Q5T1M5 1219 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 CTAGE6Q86UF2 777 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 CTAGE4Q8IX94 777 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 CARD6Q9BX69 1037 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 COPRSQ9NQ92 184 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 ADCY9O60503 1353 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 CCDC194A0A1B0GVG4 234 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 HSPD1P10809 573 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 C11orf57Q6ZUT1 292 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 ARHGEF40Q8TER5 1519 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 BMP15O95972 392 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 NUTM2AQ8IVF1 878 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 CEP112Q8N8E3 955 aa9.61□□□□□ -0.87
LIMCH1-216ENST00000512820 SSBP05455 408 aaKnown RBP eCLIP9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 BICDL1Q6ZP65 573 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 CCDC191Q8NCU4 936 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 ESR2Q92731 530 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 FAM89AQ96GI7 184 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 PYM1Q9BRP8 204 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms