RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 ZFYVE28Q9HCC9 887 aa14.95□□□□□ -0.02
RNF4-216ENST00000511859 ZNF804BA4D1E1 1349 aa14.95□□□□□ -0.02
RNF4-216ENST00000511859 DDX58O95786 925 aaKnown RBP14.94□□□□□ -0.02
RNF4-216ENST00000511859 TRIM35Q9UPQ4 493 aa14.94□□□□□ -0.02
RNF4-216ENST00000511859 PTCH2Q9Y6C5 1203 aa14.94□□□□□ -0.02
RNF4-216ENST00000511859 IGHMBP2P38935 993 aaKnown RBP14.93□□□□□ -0.02
RNF4-216ENST00000511859 NBPF12Q5TAG4 269 aaPredicted RBP14.93□□□□□ -0.02
RNF4-216ENST00000511859 MS4A4AQ96JQ5 239 aa14.93□□□□□ -0.02
RNF4-216ENST00000511859 CHMP4AQ9BY43 222 aa14.93□□□□□ -0.02
RNF4-216ENST00000511859 GREM2Q9H772 168 aa14.93□□□□□ -0.02
RNF4-216ENST00000511859 CD209Q9NNX6 404 aa14.93□□□□□ -0.02
RNF4-216ENST00000511859 RBM27Q9P2N5 1060 aaKnown RBP14.93□□□□□ -0.02
RNF4-216ENST00000511859 SSC5DA1L4H1 1573 aa14.92□□□□□ -0.02
RNF4-216ENST00000511859 WDHD1O75717 1129 aaPredicted RBP14.92□□□□□ -0.02
RNF4-216ENST00000511859 GNRH1P01148 92 aa14.92□□□□□ -0.02
RNF4-216ENST00000511859 TAF1CQ15572 869 aaPredicted RBP14.92□□□□□ -0.02
RNF4-216ENST00000511859 DPF3Q92784 378 aa14.92□□□□□ -0.02
RNF4-216ENST00000511859 OPTNQ96CV9 577 aa14.92□□□□□ -0.02
RNF4-216ENST00000511859 SPEF2Q9C093 1822 aa14.92□□□□□ -0.02
RNF4-216ENST00000511859 LAMA3Q16787 3333 aa14.91□□□□□ -0.02
RNF4-216ENST00000511859 SPDYE2BA6NHP3 402 aa14.91□□□□□ -0.02
RNF4-216ENST00000511859 SPDYE6P0CI01 402 aa14.91□□□□□ -0.02
RNF4-216ENST00000511859 PRMT2P55345 433 aa14.91□□□□□ -0.02
RNF4-216ENST00000511859 KIF22Q14807 665 aa14.91□□□□□ -0.02
RNF4-216ENST00000511859 CFAP100Q494V2 611 aa14.91□□□□□ -0.02
RNF4-216ENST00000511859 PRMT6Q96LA8 375 aaPredicted RBP14.91□□□□□ -0.02
RNF4-216ENST00000511859 GTF2A2P52657 109 aa14.9□□□□□ -0.02
RNF4-216ENST00000511859 FKBP1AP62942 108 aaKnown RBP14.9□□□□□ -0.02
RNF4-216ENST00000511859 RASA3Q14644 834 aa14.9□□□□□ -0.02
RNF4-216ENST00000511859 NKX2-3Q8TAU0 364 aa14.9□□□□□ -0.02
RNF4-216ENST00000511859 VEZTQ9HBM0 779 aa14.9□□□□□ -0.02
RNF4-216ENST00000511859 CCL15-CCL14A0A0B4J2E2 113 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 CLRN2A0PK11 232 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 MYCP01106 439 aaPredicted RBP14.89□□□□□ -0.03
RNF4-216ENST00000511859 KCNJ4P48050 445 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 TNFAIP1Q13829 316 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 CCL15Q16663 113 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 CERS5Q8N5B7 392 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 SH3TC2Q8TF17 1288 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 BRI3BPQ8WY22 251 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 RUNDC1Q96C34 613 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 MPHOSPH8Q99549 860 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 ELP3Q9H9T3 547 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 MBIPQ9NS73 344 aa14.89□□□□□ -0.03
RNF4-216ENST00000511859 TLR2O60603 784 aa14.88□□□□□ -0.03
RNF4-216ENST00000511859 KLRK1P26718 216 aa14.88□□□□□ -0.03
RNF4-216ENST00000511859 HTATIP2Q9BUP3 242 aa14.88□□□□□ -0.03
RNF4-216ENST00000511859 MAP3K2Q9Y2U5 619 aa14.88□□□□□ -0.03
RNF4-216ENST00000511859 PCDHAC2Q9Y5I4 1007 aa14.88□□□□□ -0.03
RNF4-216ENST00000511859 MAP3K9P80192 1104 aa14.87□□□□□ -0.03
RNF4-216ENST00000511859 NEXNQ0ZGT2 675 aa14.87□□□□□ -0.03
RNF4-216ENST00000511859 KSR2Q6VAB6 950 aa14.87□□□□□ -0.03
RNF4-216ENST00000511859 C15orf52Q6ZUT6 534 aaKnown RBP14.87□□□□□ -0.03
RNF4-216ENST00000511859 CCDC146Q8IYE0 955 aa14.87□□□□□ -0.03
RNF4-216ENST00000511859 PRO3102Q9H379 93 aa14.87□□□□□ -0.03
RNF4-216ENST00000511859 ZCCHC17Q9NP64 241 aaKnown RBP14.87□□□□□ -0.03
RNF4-216ENST00000511859 NR2E3Q9Y5X4 410 aa14.87□□□□□ -0.03
RNF4-216ENST00000511859 F8W031 263 aaPredicted RBP14.86□□□□□ -0.03
RNF4-216ENST00000511859 ELL2O00472 640 aaPredicted RBP14.86□□□□□ -0.03
RNF4-216ENST00000511859 IGKV5-2P06315 115 aa14.86□□□□□ -0.03
RNF4-216ENST00000511859 ZNF853P0CG23 659 aa14.86□□□□□ -0.03
RNF4-216ENST00000511859 IL1R1P14778 569 aa14.86□□□□□ -0.03
RNF4-216ENST00000511859 ITGA6P23229 1130 aa14.86□□□□□ -0.03
RNF4-216ENST00000511859 RBM5P52756 815 aaKnown RBP eCLIP14.86□□□□□ -0.03
RNF4-216ENST00000511859 LACTBP83111 547 aaPredicted RBP14.86□□□□□ -0.03
RNF4-216ENST00000511859 CCDC30Q5VVM6 783 aa14.86□□□□□ -0.03
RNF4-216ENST00000511859 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.86□□□□□ -0.03
RNF4-216ENST00000511859 FAM43AQ8N2R8 423 aa14.86□□□□□ -0.03
RNF4-216ENST00000511859 A0A1W2PPC1 479 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 PI4KAP2A4QPH2 592 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 H7C1W4 665 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 CHRNDQ07001 517 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 RALBP1Q15311 655 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 PI4KAP1Q8N8J0 262 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 HELBQ8NG08 1087 aaPredicted RBP14.85□□□□□ -0.03
RNF4-216ENST00000511859 PLA2G12BQ9BX93 195 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 CSADQ9Y600 493 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 OTOFQ9HC10 1997 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 CSF1RP07333 972 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 HOXD10P28358 340 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 MNX1P50219 401 aaPredicted RBP14.85□□□□□ -0.03
RNF4-216ENST00000511859 ZNF804AQ7Z570 1209 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 SHISA4Q96DD7 197 aa14.85□□□□□ -0.03
RNF4-216ENST00000511859 IRS2Q9Y4H2 1338 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 NEURL1BA8MQ27 555 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 CETPP11597 493 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 GJA8P48165 433 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 GNAI1P63096 354 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 VGLL4Q14135 290 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 MTFR1Q15390 333 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 SPDYE2Q495Y8 402 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 CNKSR2Q8WXI2 1034 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 ARHGAP39Q9C0H5 1083 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 IFT57Q9NWB7 429 aa14.84□□□□□ -0.03
RNF4-216ENST00000511859 ZNF70Q9UC06 446 aaPredicted RBP14.84□□□□□ -0.03
RNF4-216ENST00000511859 GJB1P08034 283 aa14.83□□□□□ -0.04
RNF4-216ENST00000511859 TNNI2P48788 182 aa14.83□□□□□ -0.04
RNF4-216ENST00000511859 CALD1Q05682 793 aaKnown RBP14.83□□□□□ -0.04
RNF4-216ENST00000511859 UBE3BQ7Z3V4 1068 aa14.83□□□□□ -0.04
RNF4-216ENST00000511859 UBE2Q1Q7Z7E8 422 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms