RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TPTE2Q6XPS3 522 aa6.54□□□□□ -1.36
HMGB1P28-201ENST00000507778 CHSY3Q70JA7 882 aa6.54□□□□□ -1.36
HMGB1P28-201ENST00000507778 BTBD6Q96KE9 485 aa6.54□□□□□ -1.36
HMGB1P28-201ENST00000507778 CLEC4MQ9H2X3 399 aaPredicted RBP6.54□□□□□ -1.36
HMGB1P28-201ENST00000507778 SEC31BQ9NQW1 1179 aa6.54□□□□□ -1.36
HMGB1P28-201ENST00000507778 SH2B1Q9NRF2 756 aaPredicted RBP6.54□□□□□ -1.36
HMGB1P28-201ENST00000507778 SOX13Q9UN79 622 aa6.54□□□□□ -1.36
HMGB1P28-201ENST00000507778 LILRB5O75023 590 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 ALBP02768 609 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 RLBP1P12271 317 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 CABP4P57796 275 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 PCDH1Q08174 1060 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 RAD51AP2Q09MP3 1159 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 ADAMTSL4Q6UY14 1074 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 VN1R5Q7Z5H4 357 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 USP48Q86UV5 1035 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 IL22RA1Q8N6P7 574 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 TGIF2Q9GZN2 237 aa6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 GPN3Q9UHW5 284 aaPredicted RBP6.53□□□□□ -1.36
HMGB1P28-201ENST00000507778 SHISA8B8ZZ34 492 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 M0R082 166 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 CELA2BP08218 269 aaPredicted RBP6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 AMPD1P23109 780 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 AFF1P51825 1210 aaKnown RBP6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 ZC3H6P61129 1189 aaKnown RBP6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 MAP3K10Q02779 954 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 PPP2R3AQ06190 1150 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 FAAP100Q0VG06 881 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 IKBKEQ14164 716 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 GRIK5Q16478 980 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 ZNF423Q2M1K9 1284 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 LYPD4Q6UWN0 246 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 ERMP1Q7Z2K6 904 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 RELL1Q8IUW5 271 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 ZNF654Q8IZM8 581 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 ZNF417Q8TAU3 575 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 C8orf37Q96NL8 207 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 NECAB3Q96P71 396 aaPredicted RBP6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 ZNF587Q96SQ5 575 aaPredicted RBP6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 RSRP1Q9BUV0 290 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 CCSER2Q9H7U1 834 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 TMEM39AQ9NV64 488 aa6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 DDX41Q9UJV9 622 aaKnown RBP6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.52□□□□□ -1.37
HMGB1P28-201ENST00000507778 B3GALT4O96024 378 aa6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 EPHA1P21709 976 aa6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 ZNF157P51786 506 aaPredicted RBP6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 PWP1Q13610 501 aa6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 ZNF394Q53GI3 561 aa6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 LCE2CQ5TA81 110 aa6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 C8orf86Q6ZUL3 223 aa6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 DDX54Q8TDD1 881 aaKnown RBP6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 SRA1Q9HD15 236 aaKnown RBP6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 COPRSQ9NQ92 184 aa6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 PPME1Q9Y570 386 aa6.51□□□□□ -1.37
HMGB1P28-201ENST00000507778 H3BRJ5 948 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 ENC1O14682 589 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 CELA3AP09093 270 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 ESRRAP11474 423 aaPredicted RBP6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 CDC25BP30305 580 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 BAG6P46379 1132 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 MAP3K11Q16584 847 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 FAM117BQ6P1L5 589 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 TRIM56Q9BRZ2 755 aaKnown RBP6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 PRDM6Q9NQX0 595 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 KBTBD4Q9NVX7 518 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 SAMM50Q9Y512 469 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 PCDHGB7Q9Y5F8 929 aa6.5□□□□□ -1.37
HMGB1P28-201ENST00000507778 SOX1O00570 391 aaPredicted RBP6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 GBP2P32456 591 aaPredicted RBP6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 ARL4DP49703 201 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 LIG3P49916 1009 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 RACK1P63244 317 aaKnown RBP6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 NAALADL2Q58DX5 795 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 MSL1Q68DK7 614 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 TTBK2Q6IQ55 1244 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 WFDC8Q8IUA0 241 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 ZSCAN1Q8NBB4 408 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 TMEM74Q96NL1 305 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 ACBD3Q9H3P7 528 aa6.49□□□□□ -1.37
HMGB1P28-201ENST00000507778 MINDY4BA8MYZ0 360 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 F6X3S4 739 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 LINC01387J3KSC0 135 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 EIF4EBP3O60516 100 aaPredicted RBP6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 PAGE1O75459 146 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 PIP4K2BP78356 416 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 NEDD1Q8NHV4 660 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 WHAMMQ8TF30 809 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 WNT8BQ93098 351 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 SOX17Q9H6I2 414 aaPredicted RBP6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 ENAMQ9NRM1 1142 aa6.48□□□□□ -1.37
HMGB1P28-201ENST00000507778 LMNB1P20700 586 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 NME2P22392 152 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 RPS26P62854 115 aaKnown RBP6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 C19orf57Q0VDD7 668 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 GNL2Q13823 731 aaKnown RBP6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 TXNDC11Q6PKC3 985 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 PHC3Q8NDX5 983 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 SLC7A3Q8WY07 619 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 RRAGCQ9HB90 399 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms