RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 HELBQ8NG08 1087 aaPredicted RBP16.39■□□□□ 0.21
TCOF1-209ENST00000506630 RCAN3Q9UKA8 241 aa16.39■□□□□ 0.21
TCOF1-209ENST00000506630 SLC10A3P09131 477 aa16.38■□□□□ 0.21
TCOF1-209ENST00000506630 TXNRD3Q86VQ6 643 aa16.38■□□□□ 0.21
TCOF1-209ENST00000506630 ITPRIPQ8IWB1 547 aa16.38■□□□□ 0.21
TCOF1-209ENST00000506630 KLHDC4Q8TBB5 520 aa16.38■□□□□ 0.21
TCOF1-209ENST00000506630 CSRNP1Q96S65 589 aa16.38■□□□□ 0.21
TCOF1-209ENST00000506630 PUS3Q9BZE2 481 aaKnown RBP16.38■□□□□ 0.21
TCOF1-209ENST00000506630 GGA3Q9NZ52 723 aa16.38■□□□□ 0.21
TCOF1-209ENST00000506630 SNAP23O00161 211 aa16.37■□□□□ 0.21
TCOF1-209ENST00000506630 CTU1Q7Z7A3 348 aaKnown RBP16.37■□□□□ 0.21
TCOF1-209ENST00000506630 ASTN2O75129 1339 aaPredicted RBP16.37■□□□□ 0.21
TCOF1-209ENST00000506630 VIL1P09327 827 aaKnown RBP16.36■□□□□ 0.21
TCOF1-209ENST00000506630 RLBP1P12271 317 aa16.36■□□□□ 0.21
TCOF1-209ENST00000506630 KLRK1P26718 216 aa16.36■□□□□ 0.21
TCOF1-209ENST00000506630 LRRC24Q50LG9 513 aa16.36■□□□□ 0.21
TCOF1-209ENST00000506630 CDCA5Q96FF9 252 aa16.36■□□□□ 0.21
TCOF1-209ENST00000506630 MXD3Q9BW11 206 aa16.36■□□□□ 0.21
TCOF1-209ENST00000506630 RFX5P48382 616 aaPredicted RBP16.35■□□□□ 0.21
TCOF1-209ENST00000506630 METTL24Q5JXM2 366 aa16.35■□□□□ 0.21
TCOF1-209ENST00000506630 MROH5Q6ZUA9 1318 aa16.35■□□□□ 0.21
TCOF1-209ENST00000506630 GNAI2P04899 355 aa16.34■□□□□ 0.21
TCOF1-209ENST00000506630 FKBP1BP68106 108 aa16.34■□□□□ 0.21
TCOF1-209ENST00000506630 PANK1Q8TE04 598 aa16.34■□□□□ 0.21
TCOF1-209ENST00000506630 FBXW7Q969H0 707 aa16.34■□□□□ 0.21
TCOF1-209ENST00000506630 RIPOR2Q9Y4F9 1068 aa16.34■□□□□ 0.21
TCOF1-209ENST00000506630 ARAP2Q8WZ64 1704 aa16.33■□□□□ 0.21
TCOF1-209ENST00000506630 MS4A1P11836 297 aa16.33■□□□□ 0.2
TCOF1-209ENST00000506630 PTPN12Q05209 780 aaKnown RBP16.33■□□□□ 0.2
TCOF1-209ENST00000506630 SCARF1Q14162 830 aa16.33■□□□□ 0.2
TCOF1-209ENST00000506630 ANGEL2Q5VTE6 544 aaKnown RBP16.33■□□□□ 0.2
TCOF1-209ENST00000506630 PRPF38BQ5VTL8 546 aaKnown RBP16.33■□□□□ 0.2
TCOF1-209ENST00000506630 PODNQ7Z5L7 613 aa16.33■□□□□ 0.2
TCOF1-209ENST00000506630 AGBL3Q8NEM8 1001 aa16.33■□□□□ 0.2
TCOF1-209ENST00000506630 COA1Q9GZY4 146 aa16.33■□□□□ 0.2
TCOF1-209ENST00000506630 SIL1Q9H173 461 aa16.33■□□□□ 0.2
TCOF1-209ENST00000506630 HDAC9Q9UKV0 1011 aa16.33■□□□□ 0.2
TCOF1-209ENST00000506630 SCAF8Q9UPN6 1271 aaKnown RBP16.33■□□□□ 0.2
TCOF1-209ENST00000506630 EYA2O00167 538 aa16.32■□□□□ 0.2
TCOF1-209ENST00000506630 SRGAP3O43295 1099 aa16.32■□□□□ 0.2
TCOF1-209ENST00000506630 ZNF280AP59817 542 aaPredicted RBP16.32■□□□□ 0.2
TCOF1-209ENST00000506630 PKN2Q16513 984 aaKnown RBP16.32■□□□□ 0.2
TCOF1-209ENST00000506630 PDE4DIPQ5VU43 2346 aa16.32■□□□□ 0.2
TCOF1-209ENST00000506630 RASAL3Q86YV0 1011 aa16.32■□□□□ 0.2
TCOF1-209ENST00000506630 GMLQ99445 158 aa16.32■□□□□ 0.2
TCOF1-209ENST00000506630 IRS2Q9Y4H2 1338 aa16.32■□□□□ 0.2
TCOF1-209ENST00000506630 USP17L3A6NCW0 530 aa16.31■□□□□ 0.2
TCOF1-209ENST00000506630 USP17L4A6NCW7 530 aa16.31■□□□□ 0.2
TCOF1-209ENST00000506630 UBE4AQ14139 1066 aa16.31■□□□□ 0.2
TCOF1-209ENST00000506630 RSBN1LQ6PCB5 846 aaPredicted RBP16.31■□□□□ 0.2
TCOF1-209ENST00000506630 USP17L1Q7RTZ2 530 aa16.31■□□□□ 0.2
TCOF1-209ENST00000506630 ZNF804AQ7Z570 1209 aa16.31■□□□□ 0.2
TCOF1-209ENST00000506630 C1orf115Q9H7X2 142 aa16.31■□□□□ 0.2
TCOF1-209ENST00000506630 HPS5Q9UPZ3 1129 aa16.31■□□□□ 0.2
TCOF1-209ENST00000506630 PA2G4Q9UQ80 394 aaKnown RBP16.31■□□□□ 0.2
TCOF1-209ENST00000506630 PDE8BO95263 885 aa16.3■□□□□ 0.2
TCOF1-209ENST00000506630 USP17L8P0C7I0 530 aa16.3■□□□□ 0.2
TCOF1-209ENST00000506630 C15orf52Q6ZUT6 534 aaKnown RBP16.3■□□□□ 0.2
TCOF1-209ENST00000506630 VGLL2Q8N8G2 317 aa16.3■□□□□ 0.2
TCOF1-209ENST00000506630 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.3■□□□□ 0.2
TCOF1-209ENST00000506630 CD209Q9NNX6 404 aa16.3■□□□□ 0.2
TCOF1-209ENST00000506630 ECM29Q5VYK3 1845 aa16.29■□□□□ 0.2
TCOF1-209ENST00000506630 PITPNM2Q9BZ72 1349 aa16.29■□□□□ 0.2
TCOF1-209ENST00000506630 MTX1Q13505 466 aa16.29■□□□□ 0.2
TCOF1-209ENST00000506630 MVPQ14764 893 aaKnown RBP16.29■□□□□ 0.2
TCOF1-209ENST00000506630 MYOZ2Q9NPC6 264 aa16.29■□□□□ 0.2
TCOF1-209ENST00000506630 COPRSQ9NQ92 184 aa16.29■□□□□ 0.2
TCOF1-209ENST00000506630 FBXO3Q9UK99 471 aa16.29■□□□□ 0.2
TCOF1-209ENST00000506630 ZNF609O15014 1411 aa16.28■□□□□ 0.2
TCOF1-209ENST00000506630 PNMA6EA0A0J9YXQ4 647 aa16.28■□□□□ 0.2
TCOF1-209ENST00000506630 ZBTB7BO15156 539 aaPredicted RBP16.28■□□□□ 0.2
TCOF1-209ENST00000506630 CIAO1O76071 339 aa16.28■□□□□ 0.2
TCOF1-209ENST00000506630 PUM3Q15397 648 aaKnown RBP16.28■□□□□ 0.2
TCOF1-209ENST00000506630 ATG9AQ7Z3C6 839 aa16.28■□□□□ 0.2
TCOF1-209ENST00000506630 COG6Q9Y2V7 657 aa16.28■□□□□ 0.2
TCOF1-209ENST00000506630 AKAP11Q9UKA4 1901 aa16.27■□□□□ 0.2
TCOF1-209ENST00000506630 TBC1D8O95759 1140 aa16.27■□□□□ 0.2
TCOF1-209ENST00000506630 IL15P40933 162 aaPredicted RBP16.27■□□□□ 0.2
TCOF1-209ENST00000506630 GYG1P46976 350 aa16.27■□□□□ 0.2
TCOF1-209ENST00000506630 GTF2IP78347 998 aa16.27■□□□□ 0.2
TCOF1-209ENST00000506630 TTLL12Q14166 644 aaPredicted RBP16.27■□□□□ 0.2
TCOF1-209ENST00000506630 DACT2Q5SW24 774 aa16.27■□□□□ 0.2
TCOF1-209ENST00000506630 STRIP1Q5VSL9 837 aa16.27■□□□□ 0.2
TCOF1-209ENST00000506630 TTLL5Q6EMB2 1281 aa16.27■□□□□ 0.2
TCOF1-209ENST00000506630 ZNF296Q8WUU4 475 aaPredicted RBP16.27■□□□□ 0.2
TCOF1-209ENST00000506630 MYO3BQ8WXR4 1341 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 UBE2Q2LH0YL09 131 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 IFIT1P09914 478 aaKnown RBP16.26■□□□□ 0.19
TCOF1-209ENST00000506630 SLC5A1P13866 664 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 IL1R1P14778 569 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 NF2P35240 595 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 VPS37DQ86XT2 251 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 OGFOD1Q8N543 542 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 CEP126Q9P2H0 1117 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 DDX19BQ9UMR2 479 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 JAG2Q9Y219 1238 aa16.26■□□□□ 0.19
TCOF1-209ENST00000506630 HIBADHP31937 336 aaKnown RBP16.25■□□□□ 0.19
TCOF1-209ENST00000506630 NBPF9Q3BBW0 867 aa16.25■□□□□ 0.19
TCOF1-209ENST00000506630 CAVIN4Q5BKX8 364 aa16.25■□□□□ 0.19
TCOF1-209ENST00000506630 MOB2Q70IA6 237 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms