RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 PSMD14O00487 310 aa10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 IL1R1P14778 569 aa10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 NUCB1Q02818 461 aa10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 CXCL9Q07325 125 aa10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 C16orf71Q8IYS4 520 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 TDRD7Q8NHU6 1098 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 KCNQ5Q9NR82 932 aa10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 DBNLQ9UJU6 430 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 GOLGB1Q14789 3259 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 IRS2Q9Y4H2 1338 aa10.04□□□□□ -0.8
LIMCH1-206ENST00000505705 SEMA3EO15041 775 aa10.03□□□□□ -0.8
LIMCH1-206ENST00000505705 DDNO94850 711 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-206ENST00000505705 LTBP1Q14766 1721 aa10.03□□□□□ -0.8
LIMCH1-206ENST00000505705 STRIP1Q5VSL9 837 aa10.03□□□□□ -0.8
LIMCH1-206ENST00000505705 ZNF526Q8TF50 670 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-206ENST00000505705 A0A1B0GUL6 1792 aa10.03□□□□□ -0.8
LIMCH1-206ENST00000505705 ZNF541Q9H0D2 1346 aa10.03□□□□□ -0.8
LIMCH1-206ENST00000505705 ZC3H4Q9UPT8 1303 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-206ENST00000505705 CCDC88AQ3V6T2 1871 aa10.02□□□□□ -0.8
LIMCH1-206ENST00000505705 GLTPD2A6NH11 291 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 ERC2O15083 957 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 MX1P20591 662 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 YY1P25490 414 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 ARID4AP29374 1257 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 LMOD1P29536 600 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 MFSD14BQ5SR56 506 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 GPC2Q8N158 579 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 SPATA5Q8NB90 893 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 WDR66Q8TBY9 1149 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 TBC1D22AQ8WUA7 517 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 DNAJC2Q99543 621 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 BOLA2Q9H3K6 86 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 SNRKQ9NRH2 765 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 ECHDC1Q9NTX5 307 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 ABCF2Q9UG63 623 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 KDM2BQ8NHM5 1336 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 SBF1O95248 1867 aa10.02□□□□□ -0.81
LIMCH1-206ENST00000505705 F8W031 263 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 VIL1P09327 827 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 MCAMP43121 646 aa10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 RASGRF1Q13972 1273 aa10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 RSBN1LQ6PCB5 846 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 ZGPATQ8N5A5 531 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 MXD3Q9BW11 206 aa10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 HMG20BQ9P0W2 317 aa10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 HDAC9Q9UKV0 1011 aa10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 GTF3C3Q9Y5Q9 886 aa10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 TTC41PQ6P2S7 1318 aa10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 MYO3BQ8WXR4 1341 aa10.01□□□□□ -0.81
LIMCH1-206ENST00000505705 UTRNP46939 3433 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 COL4A5P29400 1685 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 RPS12P25398 132 aaKnown RBP10□□□□□ -0.81
LIMCH1-206ENST00000505705 ZAP70P43403 619 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 GMPSP49915 693 aaPredicted RBP10□□□□□ -0.81
LIMCH1-206ENST00000505705 RBM5P52756 815 aaKnown RBP eCLIP10□□□□□ -0.81
LIMCH1-206ENST00000505705 DACT2Q5SW24 774 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 TSHZ3Q63HK5 1081 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 SPTY2D1Q68D10 685 aaPredicted RBP10□□□□□ -0.81
LIMCH1-206ENST00000505705 PI16Q6UXB8 463 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 CHRDL2Q6WN34 429 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 KIAA0825Q8IV33 1275 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 OGFOD1Q8N543 542 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 AGBL3Q8NEM8 1001 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 OTUD7AQ8TE49 926 aaPredicted RBP10□□□□□ -0.81
LIMCH1-206ENST00000505705 ZNF512BQ96KM6 892 aaPredicted RBP10□□□□□ -0.81
LIMCH1-206ENST00000505705 LRP2BPQ9P2M1 347 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 FAM205AQ6ZU69 1335 aa10□□□□□ -0.81
LIMCH1-206ENST00000505705 CHD4Q14839 1912 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 IQCA1LA6NCM1 817 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 H7C1D1 291 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 GLRX3O76003 335 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 MAP4K4O95819 1239 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 LDHBP07195 334 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 ATP5JP18859 108 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 FKBP1AP62942 108 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 SCARF1Q14162 830 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 TTF1Q15361 905 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 RBM26Q5T8P6 1007 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 TBC1D9Q6ZT07 1266 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 ERICH6Q7L0X2 663 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 DZIP1Q86YF9 867 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 RRAGCQ9HB90 399 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 RAI14Q9P0K7 980 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 CNOT7Q9UIV1 285 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 NDUFB9Q9Y6M9 179 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 DICER1Q9UPY3 1922 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 TIAM2Q8IVF5 1701 aa9.99□□□□□ -0.81
LIMCH1-206ENST00000505705 TRIM6-TRIM34B2RNG4 842 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 GOLIM4O00461 696 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 IDH1O75874 414 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 USP17L8P0C7I0 530 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 RGS3P49796 1198 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 SCNN1DP51172 638 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 PDE1AP54750 535 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 PLEKHM2Q8IWE5 1019 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 MICALL2Q8IY33 904 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 DPF2Q92785 391 aa9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 GPBP1L1Q9HC44 474 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-206ENST00000505705 PAG1Q9NWQ8 432 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms