RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 SNAPC2Q13487 334 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 NAP1L4Q99733 375 aaKnown RBP6.08□□□□□ -1.44
USP54-216ENST00000498143 C11orf49Q9H6J7 331 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 ZHX1Q9UKY1 873 aaPredicted RBP6.08□□□□□ -1.44
USP54-216ENST00000498143 ADAMTS13Q76LX8 1427 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 VGLL3A8MV65 326 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 ERVV-2B6SEH9 535 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 RIOK3O14730 519 aaKnown RBP6.08□□□□□ -1.44
USP54-216ENST00000498143 TPM3P06753 285 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 BMS1Q14692 1282 aaKnown RBP6.08□□□□□ -1.44
USP54-216ENST00000498143 PRAMEF18Q5VWM3 479 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 SPTY2D1Q68D10 685 aaPredicted RBP6.08□□□□□ -1.44
USP54-216ENST00000498143 PODNQ7Z5L7 613 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 DZIP1Q86YF9 867 aaKnown RBP6.08□□□□□ -1.44
USP54-216ENST00000498143 ATRXP46100 2492 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 PRAG1Q86YV5 1406 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 BBOX1O75936 387 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 MYL6BP14649 208 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 FMR1Q06787 632 aaKnown RBP eCLIP6.07□□□□□ -1.44
USP54-216ENST00000498143 NEXNQ0ZGT2 675 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 SCARF1Q14162 830 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 BRDTQ58F21 947 aaPredicted RBP6.07□□□□□ -1.44
USP54-216ENST00000498143 DPP9Q86TI2 863 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 SMAP1Q8IYB5 467 aaPredicted RBP6.07□□□□□ -1.44
USP54-216ENST00000498143 RGS22Q8NE09 1264 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 CALCOCO1Q9P1Z2 691 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 PLEKHH1Q9ULM0 1364 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 BDP1A6H8Y1 2624 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 PLEKHG3A1L390 1219 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 RAB30Q15771 203 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 MICAL1Q8TDZ2 1067 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 MPHOSPH9Q99550 1183 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 NEURL4Q96JN8 1562 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 PEX14O75381 377 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 ZKSCAN1P17029 563 aaPredicted RBP6.07□□□□□ -1.44
USP54-216ENST00000498143 OSBPP22059 807 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 PIK3R5Q8WYR1 880 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 FAM212AQ96EL1 285 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 TMEM39AQ9NV64 488 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 MROH2AA6NES4 1674 aa6.07□□□□□ -1.44
USP54-216ENST00000498143 PIK3C2GO75747 1445 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 ITGBL1O95965 494 aaPredicted RBP6.06□□□□□ -1.44
USP54-216ENST00000498143 CXCL9Q07325 125 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 TRIM29Q14134 588 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 NFKBIBQ15653 356 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 ZBTB3Q9H5J0 574 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 ZNHIT6Q9NWK9 470 aaKnown RBP6.06□□□□□ -1.44
USP54-216ENST00000498143 RAPGEFL1Q9UHV5 662 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 CPA4Q9UI42 421 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 ANKARQ7Z5J8 1434 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 CAPN2P17655 700 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 KANK4Q5T7N3 995 aaPredicted RBP6.06□□□□□ -1.44
USP54-216ENST00000498143 TMC4Q7Z404 712 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 RETREG2Q8NC44 543 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 AXIN2Q9Y2T1 843 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 RIPOR2Q9Y4F9 1068 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 FAM160A1Q05DH4 1040 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 CXorf38Q8TB03 319 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 MYCBPQ99417 103 aaPredicted RBP6.06□□□□□ -1.44
USP54-216ENST00000498143 PAGR1Q9BTK6 254 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 CARMIL3Q8ND23 1372 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 ADGRB3O60242 1522 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 TULP4Q9NRJ4 1543 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 NFKBIEO00221 500 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 TNNT1P13805 278 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 CYP2B6P20813 491 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 SLC39A6Q13433 755 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 FAM47CQ5HY64 1035 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 LCA5Q86VQ0 697 aa6.06□□□□□ -1.44
USP54-216ENST00000498143 L3MBTL3Q96JM7 780 aaPredicted RBP6.06□□□□□ -1.44
USP54-216ENST00000498143 CDC5LQ99459 802 aaKnown RBP6.06□□□□□ -1.44
USP54-216ENST00000498143 CHD4Q14839 1912 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 ZNF541Q9H0D2 1346 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 KIAA0825Q8IV33 1275 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 CEP89Q96ST8 783 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 FBXL21Q9UKT6 434 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 USP18Q9UMW8 372 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 SLC10A3P09131 477 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 BCAMP50895 628 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 GTPBP4Q9BZE4 634 aaKnown RBP6.05□□□□□ -1.44
USP54-216ENST00000498143 SH2B1Q9NRF2 756 aaPredicted RBP6.05□□□□□ -1.44
USP54-216ENST00000498143 USP42Q9H9J4 1324 aaKnown RBP6.05□□□□□ -1.44
USP54-216ENST00000498143 TEX35Q5T0J7 233 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 IL31Q6EBC2 164 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 ZNF513Q8N8E2 541 aaPredicted RBP6.05□□□□□ -1.44
USP54-216ENST00000498143 NUCKS1Q9H1E3 243 aaKnown RBP6.05□□□□□ -1.44
USP54-216ENST00000498143 MTMR10Q9NXD2 777 aa6.05□□□□□ -1.44
USP54-216ENST00000498143 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 MARCH6O60337 910 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 HMMRO75330 724 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 SPOUT1Q5T280 376 aaKnown RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 CRACR2BQ8N4Y2 399 aaPredicted RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 TIFAQ96CG3 184 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 ZBTB7BO15156 539 aaPredicted RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 TPD52L2O43399 206 aaKnown RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 SDHBP21912 280 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 PLS1Q14651 629 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 SEPT14Q6ZU15 432 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 MORC4Q8TE76 937 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms