RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 CHADLQ6NUI6 762 aa18.02■□□□□ 0.48
LIMS1-213ENST00000496653 WDR66Q8TBY9 1149 aa18.02■□□□□ 0.48
LIMS1-213ENST00000496653 KIF1BPQ96EK5 621 aa18.02■□□□□ 0.48
LIMS1-213ENST00000496653 GMLQ99445 158 aa18.02■□□□□ 0.48
LIMS1-213ENST00000496653 DENND2AQ9ULE3 1009 aa18.02■□□□□ 0.48
LIMS1-213ENST00000496653 MAST3O60307 1309 aa18.01■□□□□ 0.47
LIMS1-213ENST00000496653 PDS5AQ29RF7 1337 aaKnown RBP18.01■□□□□ 0.47
LIMS1-213ENST00000496653 KIF4BQ2VIQ3 1234 aa18.01■□□□□ 0.47
LIMS1-213ENST00000496653 TNNI3KQ59H18 835 aa18.01■□□□□ 0.47
LIMS1-213ENST00000496653 MFSD14BQ5SR56 506 aa18.01■□□□□ 0.47
LIMS1-213ENST00000496653 ZGPATQ8N5A5 531 aaKnown RBP18.01■□□□□ 0.47
LIMS1-213ENST00000496653 CRBNQ96SW2 442 aa18.01■□□□□ 0.47
LIMS1-213ENST00000496653 FPGT-TNNI3KV9GXZ4 949 aa18.01■□□□□ 0.47
LIMS1-213ENST00000496653 CCDC102BQ68D86 513 aa18■□□□□ 0.47
LIMS1-213ENST00000496653 CLASRPQ8N2M8 674 aaKnown RBP18■□□□□ 0.47
LIMS1-213ENST00000496653 XAGE2Q96GT9 111 aa18■□□□□ 0.47
LIMS1-213ENST00000496653 NEUROD6Q96NK8 337 aa18■□□□□ 0.47
LIMS1-213ENST00000496653 CLEC11AQ9Y240 323 aa18■□□□□ 0.47
LIMS1-213ENST00000496653 EXOC6BQ9Y2D4 811 aa18■□□□□ 0.47
LIMS1-213ENST00000496653 SUPT16HQ9Y5B9 1047 aaKnown RBP18■□□□□ 0.47
LIMS1-213ENST00000496653 UQCRFS1P1P0C7P4 283 aa17.99■□□□□ 0.47
LIMS1-213ENST00000496653 CCDC158Q5M9N0 1113 aa17.99■□□□□ 0.47
LIMS1-213ENST00000496653 SIRT2Q8IXJ6 389 aa17.99■□□□□ 0.47
LIMS1-213ENST00000496653 MYOZ2Q9NPC6 264 aa17.99■□□□□ 0.47
LIMS1-213ENST00000496653 TIMM10P62072 90 aa17.98■□□□□ 0.47
LIMS1-213ENST00000496653 CHAF1AQ13111 956 aaPredicted RBP17.98■□□□□ 0.47
LIMS1-213ENST00000496653 KIAA0825Q8IV33 1275 aa17.98■□□□□ 0.47
LIMS1-213ENST00000496653 RHPN1Q8TCX5 695 aa17.98■□□□□ 0.47
LIMS1-213ENST00000496653 PSME4Q14997 1843 aa17.98■□□□□ 0.47
LIMS1-213ENST00000496653 SCN9AQ15858 1988 aa17.97■□□□□ 0.47
LIMS1-213ENST00000496653 PHKA1P46020 1223 aa17.97■□□□□ 0.47
LIMS1-213ENST00000496653 TBC1D10BQ4KMP7 808 aaPredicted RBP17.97■□□□□ 0.47
LIMS1-213ENST00000496653 TRPM4Q8TD43 1214 aa17.97■□□□□ 0.47
LIMS1-213ENST00000496653 SALL1Q9NSC2 1324 aa17.97■□□□□ 0.47
LIMS1-213ENST00000496653 ARAP2Q8WZ64 1704 aa17.96■□□□□ 0.47
LIMS1-213ENST00000496653 MYO1BO43795 1136 aa17.96■□□□□ 0.47
LIMS1-213ENST00000496653 IGSF3O75054 1194 aa17.96■□□□□ 0.47
LIMS1-213ENST00000496653 ADORA1P30542 326 aa17.96■□□□□ 0.47
LIMS1-213ENST00000496653 DCPSQ96C86 337 aaKnown RBP17.96■□□□□ 0.47
LIMS1-213ENST00000496653 ZNF512BQ96KM6 892 aaPredicted RBP17.96■□□□□ 0.47
LIMS1-213ENST00000496653 LRRCC1Q9C099 1032 aa17.96■□□□□ 0.47
LIMS1-213ENST00000496653 PGAP2Q9UHJ9 254 aa17.96■□□□□ 0.47
LIMS1-213ENST00000496653 SERPINA10Q9UK55 444 aa17.96■□□□□ 0.47
LIMS1-213ENST00000496653 IQSEC3Q9UPP2 1182 aaPredicted RBP17.96■□□□□ 0.47
LIMS1-213ENST00000496653 PITPNM2Q9BZ72 1349 aa17.96■□□□□ 0.46
LIMS1-213ENST00000496653 ARID4AP29374 1257 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-213ENST00000496653 HDLBPQ00341 1268 aaKnown RBP17.95■□□□□ 0.46
LIMS1-213ENST00000496653 DLGAP5Q15398 846 aa17.95■□□□□ 0.46
LIMS1-213ENST00000496653 TTC39AQ5SRH9 613 aa17.95■□□□□ 0.46
LIMS1-213ENST00000496653 SPTY2D1Q68D10 685 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-213ENST00000496653 SAMD7Q7Z3H4 446 aa17.95■□□□□ 0.46
LIMS1-213ENST00000496653 AACSQ86V21 672 aa17.95■□□□□ 0.46
LIMS1-213ENST00000496653 CERS5Q8N5B7 392 aa17.95■□□□□ 0.46
LIMS1-213ENST00000496653 MTMR14Q8NCE2 650 aa17.95■□□□□ 0.46
LIMS1-213ENST00000496653 ZBTB47Q9UFB7 747 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-213ENST00000496653 IFIT2P09913 472 aaKnown RBP17.94■□□□□ 0.46
LIMS1-213ENST00000496653 POTEIP0CG38 1075 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 POTEJP0CG39 1038 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 RASGRF1Q13972 1273 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 CDC37L1Q7L3B6 337 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 SULF1Q8IWU6 871 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 CNTROBQ8N137 903 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 MXD3Q9BW11 206 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 TTF2Q9UNY4 1162 aaKnown RBP17.94■□□□□ 0.46
LIMS1-213ENST00000496653 JAG2Q9Y219 1238 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 ADAMTSL1Q8N6G6 1762 aa17.94■□□□□ 0.46
LIMS1-213ENST00000496653 HDAC1Q13547 482 aaPredicted RBP17.93■□□□□ 0.46
LIMS1-213ENST00000496653 RBM26Q5T8P6 1007 aaKnown RBP17.93■□□□□ 0.46
LIMS1-213ENST00000496653 SLF2Q8IX21 1173 aa17.93■□□□□ 0.46
LIMS1-213ENST00000496653 TEKT1Q969V4 418 aa17.93■□□□□ 0.46
LIMS1-213ENST00000496653 MRIQ9BWK5 157 aa17.93■□□□□ 0.46
LIMS1-213ENST00000496653 DCTPP1Q9H773 170 aa17.93■□□□□ 0.46
LIMS1-213ENST00000496653 GGA3Q9NZ52 723 aa17.93■□□□□ 0.46
LIMS1-213ENST00000496653 SHTN1A0MZ66 631 aa17.92■□□□□ 0.46
LIMS1-213ENST00000496653 F8W031 263 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-213ENST00000496653 LDHBP07195 334 aaKnown RBP17.92■□□□□ 0.46
LIMS1-213ENST00000496653 HSPA6P17066 643 aa17.92■□□□□ 0.46
LIMS1-213ENST00000496653 APLP1P51693 650 aa17.92■□□□□ 0.46
LIMS1-213ENST00000496653 MAP1SQ66K74 1059 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-213ENST00000496653 APOBEC3FQ8IUX4 373 aaKnown RBP17.92■□□□□ 0.46
LIMS1-213ENST00000496653 SPATA5Q8NB90 893 aa17.92■□□□□ 0.46
LIMS1-213ENST00000496653 EAF2Q96CJ1 260 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-213ENST00000496653 GPATCH3Q96I76 525 aa17.92■□□□□ 0.46
LIMS1-213ENST00000496653 DBNDD2Q9BQY9 259 aa17.92■□□□□ 0.46
LIMS1-213ENST00000496653 DBNLQ9UJU6 430 aaKnown RBP17.92■□□□□ 0.46
LIMS1-213ENST00000496653 PCDHB15Q9Y5E8 787 aa17.92■□□□□ 0.46
LIMS1-213ENST00000496653 COL1A1P02452 1464 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-213ENST00000496653 APBB1O00213 710 aa17.91■□□□□ 0.46
LIMS1-213ENST00000496653 WNT10BO00744 389 aa17.91■□□□□ 0.46
LIMS1-213ENST00000496653 CENPBP07199 599 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-213ENST00000496653 RBM5P52756 815 aaKnown RBP eCLIP17.91■□□□□ 0.46
LIMS1-213ENST00000496653 HIRAP54198 1017 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-213ENST00000496653 SCARF1Q14162 830 aa17.91■□□□□ 0.46
LIMS1-213ENST00000496653 KRT26Q7Z3Y9 468 aa17.91■□□□□ 0.46
LIMS1-213ENST00000496653 GCC1Q96CN9 775 aa17.91■□□□□ 0.46
LIMS1-213ENST00000496653 RWDD1Q9H446 243 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-213ENST00000496653 IL1RAPL2Q9NP60 686 aa17.91■□□□□ 0.46
LIMS1-213ENST00000496653 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-213ENST00000496653 SPDYE2BA6NHP3 402 aa17.9■□□□□ 0.46
LIMS1-213ENST00000496653 SPDYE6P0CI01 402 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms