RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 HOMER1Q86YM7 354 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 LRRN4CLQ8ND94 238 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 DNAAF4Q8WXU2 420 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 HYPKQ9NX55 129 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 USP16Q9Y5T5 823 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 KAT6BQ8WYB5 2073 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 KIF3CO14782 793 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 PPFIA4O75335 1185 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 SFPQP23246 707 aaKnown RBP eCLIP10.5□□□□□ -0.73
HPS4-217ENST00000496385 LRRCC1Q9C099 1032 aa10.5□□□□□ -0.73
HPS4-217ENST00000496385 VPS37CA5D8V6 355 aaPredicted RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 EXOC5O00471 708 aa10.49□□□□□ -0.73
HPS4-217ENST00000496385 TUBBP07437 444 aa10.49□□□□□ -0.73
HPS4-217ENST00000496385 HSP90B1P14625 803 aaKnown RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 TATP17735 454 aaPredicted RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 APOBRQ0VD83 1088 aa10.49□□□□□ -0.73
HPS4-217ENST00000496385 SART3Q15020 963 aaKnown RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 DNAJC21Q5F1R6 531 aaKnown RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 LARP1BQ659C4 914 aaKnown RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 KRT27Q7Z3Y8 459 aa10.49□□□□□ -0.73
HPS4-217ENST00000496385 LEO1Q8WVC0 666 aaPredicted RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 THRAP3Q9Y2W1 955 aaKnown RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 PPP1R12AO14974 1030 aaPredicted RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 ONECUT3O60422 494 aaPredicted RBP10.49□□□□□ -0.73
HPS4-217ENST00000496385 LONRF2Q1L5Z9 754 aa10.49□□□□□ -0.73
HPS4-217ENST00000496385 HDXQ7Z353 690 aa10.49□□□□□ -0.73
HPS4-217ENST00000496385 CARD6Q9BX69 1037 aa10.49□□□□□ -0.73
HPS4-217ENST00000496385 ZSCAN12O43309 604 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 GNAI3P08754 354 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 PRKAR2BP31323 418 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 MAP3K9P80192 1104 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 TRIM65Q6PJ69 517 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 NBPF11Q86T75 865 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 CEP57L1Q8IYX8 460 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 MARCH10Q8NA82 808 aaPredicted RBP10.48□□□□□ -0.73
HPS4-217ENST00000496385 RILPL2Q969X0 211 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 BPIFA3Q9BQP9 254 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 PARP3Q9Y6F1 533 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 DISP2A7MBM2 1401 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 C21orf2O43822 256 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 ERLIN1O75477 346 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 URI1O94763 535 aaPredicted RBP10.48□□□□□ -0.73
HPS4-217ENST00000496385 TXLNAP40222 546 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 USP5P45974 858 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 CCDC83Q8IWF9 413 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 ZCRB1Q8TBF4 217 aaKnown RBP10.48□□□□□ -0.73
HPS4-217ENST00000496385 FAM71BQ8TC56 605 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 GOLGA1Q92805 767 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 ACSBG1Q96GR2 724 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 PHACTR3Q96KR7 559 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 PARD6BQ9BYG5 372 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 ACBD3Q9H3P7 528 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 LRRC37A3O60309 1634 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 THSD7AQ9UPZ6 1657 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 RGPD1P0DJD0 1748 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 NR1I2O75469 434 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 ADRA2BP18089 450 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 PTF1AQ7RTS3 328 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 DHX40Q8IX18 779 aaKnown RBP10.48□□□□□ -0.73
HPS4-217ENST00000496385 KCNB2Q92953 911 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 CCDC34Q96HJ3 373 aa10.48□□□□□ -0.73
HPS4-217ENST00000496385 WNK3Q9BYP7 1800 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 CCDC189A1A4V9 331 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 H3BQF6 201 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 BICD2Q8TD16 824 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 APBB1O00213 710 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 TUBB2AQ13885 445 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 C8orf58Q8NAV2 365 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 TUBB2BQ9BVA1 445 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 LSG1Q9H089 658 aaKnown RBP10.47□□□□□ -0.73
HPS4-217ENST00000496385 ZSWIM6Q9HCJ5 1215 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 PDRG1Q9NUG6 133 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 VPS18Q9P253 973 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 CFAP45Q9UL16 551 aa10.47□□□□□ -0.73
HPS4-217ENST00000496385 CYP27B1O15528 508 aa10.46□□□□□ -0.73
HPS4-217ENST00000496385 CCT4P50991 539 aaKnown RBP10.46□□□□□ -0.73
HPS4-217ENST00000496385 SETQ01105 290 aaPredicted RBP10.46□□□□□ -0.73
HPS4-217ENST00000496385 E2F4Q16254 413 aa10.46□□□□□ -0.73
HPS4-217ENST00000496385 DDX11Q96FC9 970 aa10.46□□□□□ -0.73
HPS4-217ENST00000496385 GBP3Q9H0R5 595 aa10.46□□□□□ -0.73
HPS4-217ENST00000496385 RAB21Q9UL25 225 aa10.46□□□□□ -0.73
HPS4-217ENST00000496385 CYP46A1Q9Y6A2 500 aa10.46□□□□□ -0.73
HPS4-217ENST00000496385 OVOS2A0A0G2JMS6 1433 aa10.46□□□□□ -0.74
HPS4-217ENST00000496385 PATL2C9JE40 543 aaKnown RBP10.46□□□□□ -0.74
HPS4-217ENST00000496385 GORABQ5T7V8 394 aa10.46□□□□□ -0.74
HPS4-217ENST00000496385 ARMCX5Q6P1M9 558 aa10.46□□□□□ -0.74
HPS4-217ENST00000496385 SAMD1Q6SPF0 538 aaPredicted RBP10.46□□□□□ -0.74
HPS4-217ENST00000496385 LRRC31Q6UY01 552 aa10.46□□□□□ -0.74
HPS4-217ENST00000496385 C11orf57Q6ZUT1 292 aaPredicted RBP10.46□□□□□ -0.74
HPS4-217ENST00000496385 TBC1D22AQ8WUA7 517 aa10.46□□□□□ -0.74
HPS4-217ENST00000496385 SYTL4Q96C24 671 aaPredicted RBP10.46□□□□□ -0.74
HPS4-217ENST00000496385 ALDH8A1Q9H2A2 487 aaPredicted RBP10.46□□□□□ -0.74
HPS4-217ENST00000496385 CHMP3Q9Y3E7 222 aa10.46□□□□□ -0.74
HPS4-217ENST00000496385 MRFAP1Q9Y605 127 aa10.46□□□□□ -0.74
HPS4-217ENST00000496385 ERLIN2O94905 339 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 PPP2R3AQ06190 1150 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 ANKRD1Q15327 319 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 HSP90B2PQ58FF3 399 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 ZNF530Q6P9A1 599 aaPredicted RBP10.45□□□□□ -0.74
HPS4-217ENST00000496385 MEIS3Q99687 375 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms