RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 KBTBD3Q8NAB2 608 aa8.27□□□□□ -1.09
USP39-219ENST00000496047 TNPO1Q92973 898 aaKnown RBP8.27□□□□□ -1.09
USP39-219ENST00000496047 ACSBG1Q96GR2 724 aa8.27□□□□□ -1.09
USP39-219ENST00000496047 TMX3Q96JJ7 454 aa8.27□□□□□ -1.09
USP39-219ENST00000496047 DBNDD2Q9BQY9 259 aa8.27□□□□□ -1.09
USP39-219ENST00000496047 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP39-219ENST00000496047 HELLSQ9NRZ9 838 aa8.27□□□□□ -1.09
USP39-219ENST00000496047 PAG1Q9NWQ8 432 aa8.27□□□□□ -1.09
USP39-219ENST00000496047 TLR7Q9NYK1 1049 aaKnown RBP8.27□□□□□ -1.09
USP39-219ENST00000496047 ISY1Q9ULR0 285 aaKnown RBP8.27□□□□□ -1.09
USP39-219ENST00000496047 SNX14Q9Y5W7 946 aa8.27□□□□□ -1.09
USP39-219ENST00000496047 UBR3Q6ZT12 1888 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 LAMB1P07942 1786 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 KIF3CO14782 793 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 CD2BP2O95400 341 aaKnown RBP8.26□□□□□ -1.09
USP39-219ENST00000496047 HMGB1P09429 215 aaKnown RBP8.26□□□□□ -1.09
USP39-219ENST00000496047 CASTP20810 708 aaKnown RBP8.26□□□□□ -1.09
USP39-219ENST00000496047 ITGA6P23229 1130 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 GPTP24298 496 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 CUL4AQ13619 759 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 ATP2B3Q16720 1220 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 CCDC152Q4G0S7 254 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 MCMDC2Q4G0Z9 681 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 VPS53Q5VIR6 699 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 PRPF40BQ6NWY9 871 aaKnown RBP8.26□□□□□ -1.09
USP39-219ENST00000496047 BLOC1S2Q6QNY1 142 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 LDHAL6AQ6ZMR3 332 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 DEFB132Q7Z7B7 95 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 FAM89AQ96GI7 184 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 JAKMIP1Q96N16 626 aaKnown RBP8.26□□□□□ -1.09
USP39-219ENST00000496047 UTP14AQ9BVJ6 771 aaKnown RBP8.26□□□□□ -1.09
USP39-219ENST00000496047 SNRKQ9NRH2 765 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 PDRG1Q9NUG6 133 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 ATP6V1DQ9Y5K8 247 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 RBM8AQ9Y5S9 174 aaKnown RBP8.26□□□□□ -1.09
USP39-219ENST00000496047 MROH5Q6ZUA9 1318 aa8.26□□□□□ -1.09
USP39-219ENST00000496047 DPYSL4O14531 572 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 CSF1RP07333 972 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 UQCRFS1P1P0C7P4 283 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 SLC5A1P13866 664 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 NCLP19338 710 aaKnown RBP8.25□□□□□ -1.09
USP39-219ENST00000496047 SSFA2P28290 1259 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 IGHMBP2P38935 993 aaKnown RBP8.25□□□□□ -1.09
USP39-219ENST00000496047 EIF5P55010 431 aaKnown RBP8.25□□□□□ -1.09
USP39-219ENST00000496047 SF3B2Q13435 895 aaKnown RBP8.25□□□□□ -1.09
USP39-219ENST00000496047 FAM98CQ17RN3 349 aaKnown RBP8.25□□□□□ -1.09
USP39-219ENST00000496047 CSPP1Q1MSJ5 1256 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 CREB3L3Q68CJ9 461 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 ATG9AQ7Z3C6 839 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 MARCH10Q8NA82 808 aaPredicted RBP8.25□□□□□ -1.09
USP39-219ENST00000496047 MAP4K1Q92918 833 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 MPHOSPH8Q99549 860 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 USP21Q9UK80 565 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 TRPC5Q9UL62 973 aaPredicted RBP8.25□□□□□ -1.09
USP39-219ENST00000496047 LIMCH1Q9UPQ0 1083 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 RIC1Q4ADV7 1423 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 CNTNAP4Q9C0A0 1308 aa8.25□□□□□ -1.09
USP39-219ENST00000496047 WDR33Q9C0J8 1336 aaKnown RBP8.25□□□□□ -1.09
USP39-219ENST00000496047 TAF1P21675 1872 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 A0A0D9SFI3 127 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 GOLIM4O00461 696 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 TRAK2O60296 914 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 FGD1P98174 961 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 HLFQ16534 295 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 CLEC4GQ6UXB4 293 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 CLEC17AQ6ZS10 378 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 NOL8Q76FK4 1167 aaKnown RBP8.24□□□□□ -1.09
USP39-219ENST00000496047 DDX46Q7L014 1031 aaKnown RBP8.24□□□□□ -1.09
USP39-219ENST00000496047 RUFY3Q7L099 469 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 ZNF34Q8IZ26 560 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 KCNB2Q92953 911 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 FAM227BQ96M60 508 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 CDC5LQ99459 802 aaKnown RBP8.24□□□□□ -1.09
USP39-219ENST00000496047 DSCC1Q9BVC3 393 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 UPF3BQ9BZI7 483 aaKnown RBP8.24□□□□□ -1.09
USP39-219ENST00000496047 NYXQ9GZU5 481 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 CTNNA3Q9UI47 895 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 PALD1Q9ULE6 856 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 TBC1D2BQ9UPU7 963 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 SMC3Q9UQE7 1217 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 KIF3AQ9Y496 699 aa8.24□□□□□ -1.09
USP39-219ENST00000496047 RTL9Q8NET4 1388 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 RPAP1Q9BWH6 1393 aaPredicted RBP8.23□□□□□ -1.09
USP39-219ENST00000496047 MYH8P13535 1937 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 DUOX1Q9NRD9 1551 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 MYH2Q9UKX2 1941 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 SLC27A2O14975 620 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 RNF113AO15541 343 aaKnown RBP8.23□□□□□ -1.09
USP39-219ENST00000496047 PDCP20941 246 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 GTF2E1P29083 439 aaPredicted RBP8.23□□□□□ -1.09
USP39-219ENST00000496047 AK2P54819 239 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 NECTIN1Q15223 517 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 PUM3Q15397 648 aaKnown RBP8.23□□□□□ -1.09
USP39-219ENST00000496047 LRRC24Q50LG9 513 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 FNBP4Q8N3X1 1017 aaPredicted RBP8.23□□□□□ -1.09
USP39-219ENST00000496047 TTLL11Q8NHH1 800 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 SYAP1Q96A49 352 aaPredicted RBP8.23□□□□□ -1.09
USP39-219ENST00000496047 XAGE2Q96GT9 111 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 ZNF594Q96JF6 807 aaPredicted RBP8.23□□□□□ -1.09
USP39-219ENST00000496047 NIP7Q9Y221 180 aaKnown RBP eCLIP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms