RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 PRPF40BQ6NWY9 871 aaKnown RBP9.77□□□□□ -0.85
CCDC39-207ENST00000495817 BCL2L13Q9BXK5 485 aa9.77□□□□□ -0.85
CCDC39-207ENST00000495817 MRPL18Q9H0U6 180 aaKnown RBP9.77□□□□□ -0.85
CCDC39-207ENST00000495817 EHD4Q9H223 541 aa9.77□□□□□ -0.85
CCDC39-207ENST00000495817 OSGEPQ9NPF4 335 aa9.77□□□□□ -0.85
CCDC39-207ENST00000495817 USP21Q9UK80 565 aa9.77□□□□□ -0.85
CCDC39-207ENST00000495817 MBTPS1Q14703 1052 aa9.76□□□□□ -0.85
CCDC39-207ENST00000495817 ASAP3Q8TDY4 903 aa9.76□□□□□ -0.85
CCDC39-207ENST00000495817 TCF12Q99081 682 aa9.76□□□□□ -0.85
CCDC39-207ENST00000495817 SEC31BQ9NQW1 1179 aa9.76□□□□□ -0.85
CCDC39-207ENST00000495817 GATA4P43694 442 aa9.75□□□□□ -0.85
CCDC39-207ENST00000495817 TXNDC11Q6PKC3 985 aa9.75□□□□□ -0.85
CCDC39-207ENST00000495817 SHISA2Q6UWI4 295 aa9.75□□□□□ -0.85
CCDC39-207ENST00000495817 VN1R5Q7Z5H4 357 aa9.75□□□□□ -0.85
CCDC39-207ENST00000495817 SOX17Q9H6I2 414 aaPredicted RBP9.75□□□□□ -0.85
CCDC39-207ENST00000495817 NLRP2Q9NX02 1062 aa9.75□□□□□ -0.85
CCDC39-207ENST00000495817 ZNF16P17020 682 aaPredicted RBP9.74□□□□□ -0.85
CCDC39-207ENST00000495817 CD68P34810 354 aaPredicted RBP9.74□□□□□ -0.85
CCDC39-207ENST00000495817 ARL4DP49703 201 aa9.74□□□□□ -0.85
CCDC39-207ENST00000495817 ATP2B2Q01814 1243 aa9.74□□□□□ -0.85
CCDC39-207ENST00000495817 PTPN12Q05209 780 aaKnown RBP9.74□□□□□ -0.85
CCDC39-207ENST00000495817 IKBKEQ14164 716 aa9.74□□□□□ -0.85
CCDC39-207ENST00000495817 TXNRD3Q86VQ6 643 aa9.74□□□□□ -0.85
CCDC39-207ENST00000495817 A0A096LPE4 126 aa9.73□□□□□ -0.85
CCDC39-207ENST00000495817 A0A1W2PPZ6 126 aa9.73□□□□□ -0.85
CCDC39-207ENST00000495817 TM4SF5O14894 197 aa9.73□□□□□ -0.85
CCDC39-207ENST00000495817 GADD45BO75293 160 aaPredicted RBP9.73□□□□□ -0.85
CCDC39-207ENST00000495817 SUZ12Q15022 739 aaKnown RBP9.73□□□□□ -0.85
CCDC39-207ENST00000495817 ALG1LQ6GMV1 187 aa9.73□□□□□ -0.85
CCDC39-207ENST00000495817 TMEM130Q8N3G9 435 aa9.73□□□□□ -0.85
CCDC39-207ENST00000495817 GALNT11Q8NCW6 608 aa9.73□□□□□ -0.85
CCDC39-207ENST00000495817 UNCXA6NJT0 531 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 ITPKAP23677 461 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 CDC25BP30305 580 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 MAPK8P45983 427 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 FGD1P98174 961 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 C19orf57Q0VDD7 668 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 FOXD4L6Q3SYB3 417 aaPredicted RBP9.72□□□□□ -0.85
CCDC39-207ENST00000495817 ZNF326Q5BKZ1 582 aaKnown RBP9.72□□□□□ -0.85
CCDC39-207ENST00000495817 FOXD4L3Q6VB84 417 aaPredicted RBP9.72□□□□□ -0.85
CCDC39-207ENST00000495817 FBXO33Q7Z6M2 555 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 EPS8L3Q8TE67 593 aaKnown RBP9.72□□□□□ -0.85
CCDC39-207ENST00000495817 GIPC2Q8TF65 315 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 CARD10Q9BWT7 1032 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 CLEC4MQ9H2X3 399 aaPredicted RBP9.72□□□□□ -0.85
CCDC39-207ENST00000495817 ZFYVE1Q9HBF4 777 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 ABCB6Q9NP58 842 aa9.72□□□□□ -0.85
CCDC39-207ENST00000495817 METTL12A8MUP2 240 aa9.71□□□□□ -0.86
CCDC39-207ENST00000495817 ESRRAP11474 423 aaPredicted RBP9.71□□□□□ -0.86
CCDC39-207ENST00000495817 GRIA4P48058 902 aa9.71□□□□□ -0.86
CCDC39-207ENST00000495817 GRM2Q14416 872 aa9.71□□□□□ -0.86
CCDC39-207ENST00000495817 P4HBP07237 508 aaKnown RBP9.7□□□□□ -0.86
CCDC39-207ENST00000495817 SRCIN1Q9C0H9 1055 aa9.7□□□□□ -0.86
CCDC39-207ENST00000495817 AKTIPQ9H8T0 292 aa9.7□□□□□ -0.86
CCDC39-207ENST00000495817 PPP4R2Q9NY27 417 aa9.7□□□□□ -0.86
CCDC39-207ENST00000495817 F8W735 103 aaPredicted RBP9.69□□□□□ -0.86
CCDC39-207ENST00000495817 XRCC5P13010 732 aaKnown RBP9.69□□□□□ -0.86
CCDC39-207ENST00000495817 PCDH1Q08174 1060 aa9.69□□□□□ -0.86
CCDC39-207ENST00000495817 RPS26P11Q5JNZ5 115 aaPredicted RBP9.69□□□□□ -0.86
CCDC39-207ENST00000495817 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.69□□□□□ -0.86
CCDC39-207ENST00000495817 SLC7A3Q8WY07 619 aa9.69□□□□□ -0.86
CCDC39-207ENST00000495817 ZNF576Q9H609 170 aa9.69□□□□□ -0.86
CCDC39-207ENST00000495817 TMEM238LA0A1B0GVL6 79 aa9.68□□□□□ -0.86
CCDC39-207ENST00000495817 GIPC1O14908 333 aa9.68□□□□□ -0.86
CCDC39-207ENST00000495817 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.68□□□□□ -0.86
CCDC39-207ENST00000495817 EAPPQ56P03 285 aaPredicted RBP9.68□□□□□ -0.86
CCDC39-207ENST00000495817 Q6ZS46 218 aa9.68□□□□□ -0.86
CCDC39-207ENST00000495817 GLIS3Q8NEA6 775 aa9.68□□□□□ -0.86
CCDC39-207ENST00000495817 DDX54Q8TDD1 881 aaKnown RBP9.68□□□□□ -0.86
CCDC39-207ENST00000495817 WFDC12Q8WWY7 111 aa9.68□□□□□ -0.86
CCDC39-207ENST00000495817 KLHDC7BQ96G42 594 aa9.68□□□□□ -0.86
CCDC39-207ENST00000495817 SOX1O00570 391 aaPredicted RBP9.67□□□□□ -0.86
CCDC39-207ENST00000495817 ADAM11O75078 769 aa9.67□□□□□ -0.86
CCDC39-207ENST00000495817 B3GALT4O96024 378 aa9.67□□□□□ -0.86
CCDC39-207ENST00000495817 DUOXA2Q1HG44 320 aa9.67□□□□□ -0.86
CCDC39-207ENST00000495817 SPRED3Q2MJR0 410 aa9.67□□□□□ -0.86
CCDC39-207ENST00000495817 FRMD6Q96NE9 622 aa9.67□□□□□ -0.86
CCDC39-207ENST00000495817 LDHBP07195 334 aaKnown RBP9.66□□□□□ -0.86
CCDC39-207ENST00000495817 NOS3P29474 1203 aa9.66□□□□□ -0.86
CCDC39-207ENST00000495817 ACAD11Q709F0 780 aa9.66□□□□□ -0.86
CCDC39-207ENST00000495817 MRRFQ96E11 262 aaKnown RBP9.66□□□□□ -0.86
CCDC39-207ENST00000495817 BCO2Q9BYV7 579 aa9.66□□□□□ -0.86
CCDC39-207ENST00000495817 KCNK4Q9NYG8 393 aa9.66□□□□□ -0.86
CCDC39-207ENST00000495817 SPG7Q9UQ90 795 aa9.66□□□□□ -0.86
CCDC39-207ENST00000495817 PRPF40AO75400 957 aaKnown RBP9.65□□□□□ -0.86
CCDC39-207ENST00000495817 IREB2P48200 963 aaKnown RBP9.65□□□□□ -0.86
CCDC39-207ENST00000495817 PI16Q6UXB8 463 aa9.65□□□□□ -0.86
CCDC39-207ENST00000495817 SSBP4Q9BWG4 385 aaPredicted RBP9.65□□□□□ -0.86
CCDC39-207ENST00000495817 BCL11AQ9H165 835 aa9.65□□□□□ -0.86
CCDC39-207ENST00000495817 KIAA1522Q9P206 1035 aaPredicted RBP9.65□□□□□ -0.86
CCDC39-207ENST00000495817 WISP1O95388 367 aa9.64□□□□□ -0.87
CCDC39-207ENST00000495817 VAMP1P23763 118 aa9.64□□□□□ -0.87
CCDC39-207ENST00000495817 NLRP12P59046 1061 aa9.64□□□□□ -0.87
CCDC39-207ENST00000495817 DTHD1Q6ZMT9 781 aa9.64□□□□□ -0.87
CCDC39-207ENST00000495817 UBASH3BQ8TF42 649 aa9.64□□□□□ -0.87
CCDC39-207ENST00000495817 CEP41Q9BYV8 373 aa9.64□□□□□ -0.87
CCDC39-207ENST00000495817 TPSG1Q9NRR2 321 aa9.64□□□□□ -0.87
CCDC39-207ENST00000495817 GSTT1P30711 240 aa9.63□□□□□ -0.87
CCDC39-207ENST00000495817 ZNF423Q2M1K9 1284 aa9.63□□□□□ -0.87
CCDC39-207ENST00000495817 HP1BP3Q5SSJ5 553 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms