RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 CD99L2Q8TCZ2 262 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 CELF1Q92879 486 aaKnown RBP13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 TBC1D32Q96NH3 1257 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 ZC3H12CQ9C0D7 883 aaKnown RBP13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 RWDD1Q9H446 243 aaPredicted RBP13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 EFCC1Q9HA90 598 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 PODXL2Q9NZ53 605 aa13.14□□□□□ -0.31
PDLIM1-205ENST00000493949 ZBTB48P10074 688 aaPredicted RBP13.13□□□□□ -0.31
PDLIM1-205ENST00000493949 PRKCSHP14314 528 aaPredicted RBP13.13□□□□□ -0.31
PDLIM1-205ENST00000493949 TTLL12Q14166 644 aaPredicted RBP13.13□□□□□ -0.31
PDLIM1-205ENST00000493949 PDIA6Q15084 440 aa13.13□□□□□ -0.31
PDLIM1-205ENST00000493949 WWC1Q8IX03 1113 aa13.13□□□□□ -0.31
PDLIM1-205ENST00000493949 MYH16Q9H6N6 1097 aa13.13□□□□□ -0.31
PDLIM1-205ENST00000493949 TRMT112Q9UI30 125 aaKnown RBP13.13□□□□□ -0.31
PDLIM1-205ENST00000493949 IGF2BP3O00425 579 aaKnown RBP eCLIP13.12□□□□□ -0.31
PDLIM1-205ENST00000493949 CAP1Q01518 475 aa13.12□□□□□ -0.31
PDLIM1-205ENST00000493949 ARMC9Q7Z3E5 817 aa13.12□□□□□ -0.31
PDLIM1-205ENST00000493949 CFAP53Q96M91 514 aa13.12□□□□□ -0.31
PDLIM1-205ENST00000493949 SCAF8Q9UPN6 1271 aaKnown RBP13.12□□□□□ -0.31
PDLIM1-205ENST00000493949 FRAT2O75474 233 aaPredicted RBP13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 RGS3P49796 1198 aa13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 SP3Q02447 781 aa13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 MAP3K11Q16584 847 aa13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 PROSER3Q2NL68 480 aa13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 NBPF9Q3BBW0 867 aa13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 NBPF11Q86T75 865 aa13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 ANTXR1Q9H6X2 564 aa13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 ECM29Q5VYK3 1845 aa13.11□□□□□ -0.31
PDLIM1-205ENST00000493949 A0A1W2PPC1 479 aa13.1□□□□□ -0.31
PDLIM1-205ENST00000493949 UNCXA6NJT0 531 aa13.1□□□□□ -0.31
PDLIM1-205ENST00000493949 BRPF3Q9ULD4 1205 aa13.1□□□□□ -0.31
PDLIM1-205ENST00000493949 IL16Q14005 1332 aa13.1□□□□□ -0.31
PDLIM1-205ENST00000493949 KIF16BQ96L93 1317 aa13.1□□□□□ -0.31
PDLIM1-205ENST00000493949 WNT10BO00744 389 aa13.09□□□□□ -0.31
PDLIM1-205ENST00000493949 MMP14P50281 582 aa13.09□□□□□ -0.31
PDLIM1-205ENST00000493949 RARSP54136 660 aaKnown RBP13.09□□□□□ -0.31
PDLIM1-205ENST00000493949 CRHR2Q13324 411 aa13.09□□□□□ -0.31
PDLIM1-205ENST00000493949 SLC9C1Q4G0N8 1177 aa13.09□□□□□ -0.31
PDLIM1-205ENST00000493949 PODNQ7Z5L7 613 aa13.09□□□□□ -0.31
PDLIM1-205ENST00000493949 PLSCR2Q9NRY7 297 aa13.09□□□□□ -0.31
PDLIM1-205ENST00000493949 COL1A1P02452 1464 aaPredicted RBP13.09□□□□□ -0.31
PDLIM1-205ENST00000493949 TESPA1A2RU30 521 aaPredicted RBP13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 USP17L3A6NCW0 530 aa13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 USP17L4A6NCW7 530 aa13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 RPS8P62241 208 aaKnown RBP13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 SLC4A8Q2Y0W8 1093 aa13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 OTUD7BQ6GQQ9 843 aa13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 USP17L1Q7RTZ2 530 aa13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 WNK4Q96J92 1243 aa13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 CHMP4BQ9H444 224 aaKnown RBP13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 ANGEL1Q9UNK9 670 aaKnown RBP13.08□□□□□ -0.32
PDLIM1-205ENST00000493949 DDX11L8A8MPP1 907 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 G3V3G9 751 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 BCAR3O75815 825 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 UFL1O94874 794 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 EIF2S2P20042 333 aaKnown RBP13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 HDAC1Q13547 482 aaPredicted RBP13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 ARHGEF6Q15052 776 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 DCAF8Q5TAQ9 597 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 UBE2Q2Q8WVN8 375 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 SLC10A4Q96EP9 437 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 CHMP5Q9NZZ3 219 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 CIZ1Q9ULV3 898 aaPredicted RBP13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 PTCH2Q9Y6C5 1203 aa13.07□□□□□ -0.32
PDLIM1-205ENST00000493949 IGHDP01880 384 aa13.06□□□□□ -0.32
PDLIM1-205ENST00000493949 COPS6Q7L5N1 327 aa13.06□□□□□ -0.32
PDLIM1-205ENST00000493949 APOBEC3FQ8IUX4 373 aaKnown RBP13.06□□□□□ -0.32
PDLIM1-205ENST00000493949 GGA1Q9UJY5 639 aa13.06□□□□□ -0.32
PDLIM1-205ENST00000493949 FSD2A1L4K1 749 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 AIMP1Q12904 312 aaKnown RBP13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 PRKG1Q13976 671 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 MVPQ14764 893 aaKnown RBP13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 DACT2Q5SW24 774 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 GPR153Q6NV75 609 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 UBE2Q1Q7Z7E8 422 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 OGFOD1Q8N543 542 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 PTPN18Q99952 460 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 PNNQ9H307 717 aaKnown RBP13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 MYO3BQ8WXR4 1341 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 OTOFQ9HC10 1997 aa13.05□□□□□ -0.32
PDLIM1-205ENST00000493949 ZSWIM8A7E2V4 1837 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 SSC5DA1L4H1 1573 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 SOX1O00570 391 aaPredicted RBP13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 ZKSCAN2Q63HK3 967 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 CCDC146Q8IYE0 955 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 XAGE3Q8WTP9 111 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 DPF3Q92784 378 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 SHISA4Q96DD7 197 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 FAM89AQ96GI7 184 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 ZBED3Q96IU2 234 aaPredicted RBP13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 ISCA1Q9BUE6 129 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 ANKIB1Q9P2G1 1089 aa13.04□□□□□ -0.32
PDLIM1-205ENST00000493949 WTIPA6NIX2 430 aaPredicted RBP13.03□□□□□ -0.32
PDLIM1-205ENST00000493949 GJA5P36382 358 aa13.03□□□□□ -0.32
PDLIM1-205ENST00000493949 SLC4A3P48751 1232 aa13.03□□□□□ -0.32
PDLIM1-205ENST00000493949 CLMNQ96JQ2 1002 aa13.03□□□□□ -0.32
PDLIM1-205ENST00000493949 PLEKHF1Q96S99 279 aa13.03□□□□□ -0.32
PDLIM1-205ENST00000493949 DDX19BQ9UMR2 479 aa13.03□□□□□ -0.32
PDLIM1-205ENST00000493949 SPEF2Q9C093 1822 aa13.02□□□□□ -0.32
PDLIM1-205ENST00000493949 GOLGA6L3A6NEY3 463 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms