RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 TNMDQ9H2S6 317 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 INCENPQ9NQS7 918 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.47□□□□□ -0.413e-7■■□□□ 13.8
MSH5-SAPCD1-207ENST00000493662 ZSCAN22P10073 491 aaPredicted RBP12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 HSP90AA4PQ58FG1 418 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 FILIP1Q7Z7B0 1213 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 KBTBD3Q8NAB2 608 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 GPR101Q96P66 508 aaPredicted RBP12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ORC3Q9UBD5 711 aaPredicted RBP12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 TPCN1Q9ULQ1 816 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 RTCBQ9Y3I0 505 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 TNS3Q68CZ2 1445 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 GPAA1O43292 621 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 SART3Q15020 963 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 TMCO3Q6UWJ1 677 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 LSG1Q9H089 658 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 FER1L4A9Z1Z3 1794 aa12.47□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CTDSPL2Q05D32 466 aa12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 TMEM67Q5HYA8 995 aa12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ZFP91Q96JP5 570 aaPredicted RBP12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 CDC5LQ99459 802 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 PRC1O43663 620 aa12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 MARCH6O60337 910 aa12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 BMS1Q14692 1282 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ZSCAN29Q8IWY8 852 aaPredicted RBP12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 UBXN4Q92575 508 aa12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 RPGRQ92834 1020 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-207ENST00000493662 ZNF622Q969S3 477 aaKnown RBP eCLIP12.46□□□□□ -0.413e-8■□□□□ 10.7
MSH5-SAPCD1-207ENST00000493662 USP5P45974 858 aa12.46□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PDILTQ8N807 584 aa12.46□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 C8orf76Q96K31 380 aa12.46□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 A0A0G2JLW4 131 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 KINO60870 393 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CTSWP56202 376 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SCARF1Q14162 830 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ZSCAN25Q6NSZ9 544 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 GIGYF2Q6Y7W6 1299 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CDC37L1Q7L3B6 337 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 STAP2Q9UGK3 403 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MEGF6O75095 1541 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MARCKSP29966 332 aaPredicted RBP12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SAFBQ15424 915 aaKnown RBP eCLIP12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 NLRP10Q86W26 655 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 KIF18AQ8NI77 898 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 VAT1LQ9HCJ6 419 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 COPRSQ9NQ92 184 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PDE8AO60658 829 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ANAPC15P60006 121 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SUSD4Q5VX71 490 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SDR42E1Q8WUS8 393 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SLC26A6Q9BXS9 759 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 OSBPL3Q9H4L5 887 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 KIF24Q5T7B8 1368 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ZBTB22O15209 634 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ZSCAN20P17040 1043 aaPredicted RBP12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 IKQ13123 557 aaPredicted RBP12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 C10orf67Q8IYJ2 551 aa12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ZBTB38Q8NAP3 1195 aaPredicted RBP12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SH2B1Q9NRF2 756 aaPredicted RBP12.45□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MAP3K15Q6ZN16 1313 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ZNF532Q9HCE3 1301 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CYP21A2P08686 494 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ATP5JP18859 108 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PHKBQ93100 1093 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 GJB4Q9NTQ9 266 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TRMT1Q9NXH9 659 aaKnown RBP12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PAXBP1Q9Y5B6 917 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 F13A1P00488 732 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 AMOTL1Q8IY63 956 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 STX8Q9UNK0 236 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CEMIPQ8WUJ3 1361 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 A0A087WWV3 80 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 GOLGA8AA7E2F4 631 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TRIM37O94972 964 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 LMBRD1Q9NUN5 540 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SLC12A7Q9Y666 1083 aa12.44□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PATL2C9JE40 543 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CCDC102BQ68D86 513 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 NUP62CLQ9H1M0 184 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TMX1Q9H3N1 280 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PTPDC1A2A3K4 754 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 NCOA7Q8NI08 942 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 OSBP2Q969R2 916 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PUS7LQ9H0K6 701 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 RPS6KB1P23443 525 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PICALMQ13492 652 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MFSD6Q6ZSS7 791 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 FTOQ9C0B1 505 aaKnown RBP eCLIP12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 RASSF4Q9H2L5 321 aa12.43□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 H0YHG0 523 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 HSPD1P10809 573 aaKnown RBP12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CEP135Q66GS9 1140 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TPTE2Q6XPS3 522 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CCDC186Q7Z3E2 898 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MKNK2Q9HBH9 465 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 DACT1Q9NYF0 836 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TMEM63CQ9P1W3 806 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 UBR1Q8IWV7 1749 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PRKAB2O43741 272 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 METAP2P50579 478 aaKnown RBP eCLIP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms