RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 RBM26Q5T8P6 1007 aaKnown RBP13.5□□□□□ -0.25
COL6A3-214ENST00000493608 LMBR1LQ6UX01 489 aa13.5□□□□□ -0.25
COL6A3-214ENST00000493608 SAMD7Q7Z3H4 446 aa13.5□□□□□ -0.25
COL6A3-214ENST00000493608 JMYQ8N9B5 988 aa13.5□□□□□ -0.25
COL6A3-214ENST00000493608 HELBQ8NG08 1087 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-214ENST00000493608 ZNF594Q96JF6 807 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-214ENST00000493608 PCNTO95613 3336 aa13.49□□□□□ -0.25
COL6A3-214ENST00000493608 SNAP23O00161 211 aa13.49□□□□□ -0.25
COL6A3-214ENST00000493608 ALDH1L1O75891 902 aa13.49□□□□□ -0.25
COL6A3-214ENST00000493608 EGFRP00533 1210 aa13.49□□□□□ -0.25
COL6A3-214ENST00000493608 IFIT5Q13325 482 aaKnown RBP13.49□□□□□ -0.25
COL6A3-214ENST00000493608 TBC1D10BQ4KMP7 808 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-214ENST00000493608 DIEXFQ68CQ4 756 aaKnown RBP13.49□□□□□ -0.25
COL6A3-214ENST00000493608 TXNRD3Q86VQ6 643 aa13.49□□□□□ -0.25
COL6A3-214ENST00000493608 TRMT2AQ8IZ69 625 aaKnown RBP13.49□□□□□ -0.25
COL6A3-214ENST00000493608 TAF5LO75529 589 aa13.48□□□□□ -0.25
COL6A3-214ENST00000493608 VIL1P09327 827 aaKnown RBP13.48□□□□□ -0.25
COL6A3-214ENST00000493608 NBPF7P0C2Y1 421 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-214ENST00000493608 KLRK1P26718 216 aa13.48□□□□□ -0.25
COL6A3-214ENST00000493608 MMRN1Q13201 1228 aa13.48□□□□□ -0.25
COL6A3-214ENST00000493608 DLK2Q6UY11 383 aa13.48□□□□□ -0.25
COL6A3-214ENST00000493608 DPF2Q92785 391 aa13.48□□□□□ -0.25
COL6A3-214ENST00000493608 FBXW7Q969H0 707 aa13.48□□□□□ -0.25
COL6A3-214ENST00000493608 SUCLG2Q96I99 432 aa13.48□□□□□ -0.25
COL6A3-214ENST00000493608 GLIS2Q9BZE0 524 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-214ENST00000493608 TRPM7Q96QT4 1865 aa13.48□□□□□ -0.25
COL6A3-214ENST00000493608 PLIN1O60240 522 aa13.47□□□□□ -0.25
COL6A3-214ENST00000493608 CHRNDQ07001 517 aa13.47□□□□□ -0.25
COL6A3-214ENST00000493608 KAZALD1Q96I82 304 aa13.47□□□□□ -0.25
COL6A3-214ENST00000493608 MXD3Q9BW11 206 aa13.47□□□□□ -0.25
COL6A3-214ENST00000493608 ABT1Q9ULW3 272 aaKnown RBP13.47□□□□□ -0.25
COL6A3-214ENST00000493608 LEMD3Q9Y2U8 911 aa13.47□□□□□ -0.25
COL6A3-214ENST00000493608 ZNF804BA4D1E1 1349 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 PTPRCP08575 1304 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 USP17L3A6NCW0 530 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 USP17L4A6NCW7 530 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 RPS12P25398 132 aaKnown RBP13.46□□□□□ -0.25
COL6A3-214ENST00000493608 KCNJ4P48050 445 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 VEGFBP49765 207 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 CCDC57Q2TAC2 916 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 TAF7LQ5H9L4 462 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 CST9Q5W186 159 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 RSBN1LQ6PCB5 846 aaPredicted RBP13.46□□□□□ -0.25
COL6A3-214ENST00000493608 USP17L1Q7RTZ2 530 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 USP48Q86UV5 1035 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 ANKRD2Q9GZV1 360 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 SMC4Q9NTJ3 1288 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 PGAP2Q9UHJ9 254 aa13.46□□□□□ -0.25
COL6A3-214ENST00000493608 PSME4Q14997 1843 aa13.46□□□□□ -0.26
COL6A3-214ENST00000493608 CNTNAP1P78357 1384 aa13.45□□□□□ -0.26
COL6A3-214ENST00000493608 MED23Q9ULK4 1368 aa13.45□□□□□ -0.26
COL6A3-214ENST00000493608 DEFB115Q30KQ5 88 aa13.45□□□□□ -0.26
COL6A3-214ENST00000493608 ALDH1L2Q3SY69 923 aa13.45□□□□□ -0.26
COL6A3-214ENST00000493608 LDHAL6AQ6ZMR3 332 aa13.45□□□□□ -0.26
COL6A3-214ENST00000493608 PODNQ7Z5L7 613 aa13.45□□□□□ -0.26
COL6A3-214ENST00000493608 BICC1Q9H694 974 aaKnown RBP13.45□□□□□ -0.26
COL6A3-214ENST00000493608 ZNF408Q9H9D4 720 aa13.45□□□□□ -0.26
COL6A3-214ENST00000493608 NOB1Q9ULX3 412 aaKnown RBP13.45□□□□□ -0.26
COL6A3-214ENST00000493608 ASTN2O75129 1339 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-214ENST00000493608 CELF2O95319 508 aaKnown RBP13.44□□□□□ -0.26
COL6A3-214ENST00000493608 HSPA1AP0DMV8 641 aaKnown RBP13.44□□□□□ -0.26
COL6A3-214ENST00000493608 HSPA1BP0DMV9 641 aaKnown RBP13.44□□□□□ -0.26
COL6A3-214ENST00000493608 KIF4BQ2VIQ3 1234 aa13.44□□□□□ -0.26
COL6A3-214ENST00000493608 ZC3H15Q8WU90 426 aaKnown RBP13.44□□□□□ -0.26
COL6A3-214ENST00000493608 PUS3Q9BZE2 481 aaKnown RBP13.44□□□□□ -0.26
COL6A3-214ENST00000493608 COA1Q9GZY4 146 aa13.44□□□□□ -0.26
COL6A3-214ENST00000493608 GPHNQ9NQX3 736 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-214ENST00000493608 CNNM1Q9NRU3 951 aa13.44□□□□□ -0.26
COL6A3-214ENST00000493608 A0A1B0GUL6 1792 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 FOXK1P85037 733 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 GRM1Q13255 1194 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 PAXIP1Q6ZW49 1069 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-214ENST00000493608 CDC37L1Q7L3B6 337 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 ZNF687Q8N1G0 1237 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 AGBL3Q8NEM8 1001 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 GMLQ99445 158 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 USP44Q9H0E7 712 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 RYDENQ9NUL5 291 aaKnown RBP13.43□□□□□ -0.26
COL6A3-214ENST00000493608 PCDHGA4Q9Y5G9 962 aa13.43□□□□□ -0.26
COL6A3-214ENST00000493608 UTYO14607 1347 aa13.42□□□□□ -0.26
COL6A3-214ENST00000493608 ADM5C9JUS6 153 aa13.42□□□□□ -0.26
COL6A3-214ENST00000493608 USP17L8P0C7I0 530 aa13.42□□□□□ -0.26
COL6A3-214ENST00000493608 GTF2IP78347 998 aa13.42□□□□□ -0.26
COL6A3-214ENST00000493608 SCARF1Q14162 830 aa13.42□□□□□ -0.26
COL6A3-214ENST00000493608 DACT2Q5SW24 774 aa13.42□□□□□ -0.26
COL6A3-214ENST00000493608 TTLL5Q6EMB2 1281 aa13.42□□□□□ -0.26
COL6A3-214ENST00000493608 DCPSQ96C86 337 aaKnown RBP13.42□□□□□ -0.26
COL6A3-214ENST00000493608 SCAF8Q9UPN6 1271 aaKnown RBP13.42□□□□□ -0.26
COL6A3-214ENST00000493608 WDR33Q9C0J8 1336 aaKnown RBP13.41□□□□□ -0.26
COL6A3-214ENST00000493608 RASSF10A6NK89 507 aa13.41□□□□□ -0.26
COL6A3-214ENST00000493608 GTPBP6O43824 516 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-214ENST00000493608 RARSP54136 660 aaKnown RBP13.41□□□□□ -0.26
COL6A3-214ENST00000493608 ZNF280AP59817 542 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-214ENST00000493608 CYP4F22Q6NT55 531 aa13.41□□□□□ -0.26
COL6A3-214ENST00000493608 KRT26Q7Z3Y9 468 aa13.41□□□□□ -0.26
COL6A3-214ENST00000493608 ANKRD44Q8N8A2 993 aa13.41□□□□□ -0.26
COL6A3-214ENST00000493608 KLHDC4Q8TBB5 520 aa13.41□□□□□ -0.26
COL6A3-214ENST00000493608 CD209Q9NNX6 404 aa13.41□□□□□ -0.26
COL6A3-214ENST00000493608 MYOZ2Q9NPC6 264 aa13.41□□□□□ -0.26
COL6A3-214ENST00000493608 ZNF646O15015 1829 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms