RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 AKAP2Q9Y2D5 859 aa13.5□□□□□ -0.25
HDAC4-210ENST00000493582 MED23Q9ULK4 1368 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 ARHGAP6O43182 974 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 CYP21A2P08686 494 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 ATP2B1P20020 1258 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 CCDC12Q8WUD4 166 aaPredicted RBP13.49□□□□□ -0.25
HDAC4-210ENST00000493582 KRT32Q14532 448 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 BRD3Q15059 726 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 STK38Q15208 465 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 PNKPQ96T60 521 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 C9orf78Q9NZ63 289 aaPredicted RBP13.49□□□□□ -0.25
HDAC4-210ENST00000493582 COL15A1P39059 1388 aa13.49□□□□□ -0.25
HDAC4-210ENST00000493582 PFKFB2O60825 505 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 ADKP55263 362 aaKnown RBP13.48□□□□□ -0.25
HDAC4-210ENST00000493582 MTX1Q13505 466 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 LRRC31Q6UY01 552 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 HDXQ7Z353 690 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 VSTM4Q8IW00 320 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 BAG1Q99933 345 aaPredicted RBP13.48□□□□□ -0.25
HDAC4-210ENST00000493582 DEF6Q9H4E7 631 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 ANKZF1Q9H8Y5 726 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 PRR36Q9H6K5 1346 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 ALDH1L1O75891 902 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 PRR29P0C7W0 189 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 CHMP4BP1P59074 171 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 LINC00301Q8NCQ3 95 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 ABCB6Q9NP58 842 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 PXDNLA1KZ92 1463 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 TFRCP02786 760 aaKnown RBP13.48□□□□□ -0.25
HDAC4-210ENST00000493582 CORO7P57737 925 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 JAKMIP3Q5VZ66 844 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 PPM1EQ8WY54 764 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 CCDC102AQ96A19 550 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 LLPHQ9BRT6 129 aaKnown RBP13.48□□□□□ -0.25
HDAC4-210ENST00000493582 DLC1Q96QB1 1528 aa13.48□□□□□ -0.25
HDAC4-210ENST00000493582 USPL1Q5W0Q7 1092 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 STOX1Q6ZVD7 989 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 BICC1Q9H694 974 aaKnown RBP13.47□□□□□ -0.25
HDAC4-210ENST00000493582 FANCLQ9NW38 375 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 RTEL1Q9NZ71 1219 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 A0A1W2PQ27 194 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 A0A1W2PQ64 194 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 A0A1W2PQD8 194 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 PSEN1P49768 467 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 ATL3Q6DD88 541 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 CHST3Q7LGC8 479 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 FCHSD1Q86WN1 690 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 KLHDC4Q8TBB5 520 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 L1RE1Q9UN81 338 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 NRKQ7Z2Y5 1582 aa13.47□□□□□ -0.25
HDAC4-210ENST00000493582 FAM208AQ9UK61 1670 aaKnown RBP13.47□□□□□ -0.25
HDAC4-210ENST00000493582 IKBKBO14920 756 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 CWF19L2Q2TBE0 894 aaKnown RBP13.46□□□□□ -0.25
HDAC4-210ENST00000493582 RPS6KA5O75582 802 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 RHOXF2BP0C7M4 288 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 G3BP1Q13283 466 aaKnown RBP eCLIP13.46□□□□□ -0.25
HDAC4-210ENST00000493582 MTF1Q14872 753 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 CNNM3Q8NE01 707 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 RHOXF2Q9BQY4 288 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 LZTFL1Q9NQ48 299 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 GJB4Q9NTQ9 266 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 INTS13Q9NVM9 706 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 HDAC5Q9UQL6 1122 aa13.46□□□□□ -0.25
HDAC4-210ENST00000493582 A0A0U1RQJ8 604 aa13.46□□□□□ -0.26
HDAC4-210ENST00000493582 CBFA2T2O43439 604 aa13.46□□□□□ -0.26
HDAC4-210ENST00000493582 WDHD1O75717 1129 aaPredicted RBP13.46□□□□□ -0.26
HDAC4-210ENST00000493582 MMP14P50281 582 aa13.46□□□□□ -0.26
HDAC4-210ENST00000493582 TEFQ10587 303 aa13.46□□□□□ -0.26
HDAC4-210ENST00000493582 ATRIPQ8WXE1 791 aa13.46□□□□□ -0.26
HDAC4-210ENST00000493582 MRPL44Q9H9J2 332 aaKnown RBP13.46□□□□□ -0.26
HDAC4-210ENST00000493582 DIP2CQ9Y2E4 1556 aa13.46□□□□□ -0.26
HDAC4-210ENST00000493582 SPTLC2O15270 562 aa13.45□□□□□ -0.26
HDAC4-210ENST00000493582 CUTAO60888 179 aa13.45□□□□□ -0.26
HDAC4-210ENST00000493582 MYL5Q02045 173 aa13.45□□□□□ -0.26
HDAC4-210ENST00000493582 SRGAP1Q7Z6B7 1085 aa13.45□□□□□ -0.26
HDAC4-210ENST00000493582 MKRN1Q9UHC7 482 aaKnown RBP13.45□□□□□ -0.26
HDAC4-210ENST00000493582 PFKFB1P16118 471 aa13.45□□□□□ -0.26
HDAC4-210ENST00000493582 MON2Q7Z3U7 1717 aa13.45□□□□□ -0.26
HDAC4-210ENST00000493582 HNRNPLLQ8WVV9 542 aaKnown RBP13.45□□□□□ -0.26
HDAC4-210ENST00000493582 ACEP12821 1306 aa13.45□□□□□ -0.26
HDAC4-210ENST00000493582 EIF3JO75822 258 aaKnown RBP13.44□□□□□ -0.26
HDAC4-210ENST00000493582 FDPSP14324 419 aaKnown RBP13.44□□□□□ -0.26
HDAC4-210ENST00000493582 MARCKSP29966 332 aaPredicted RBP13.44□□□□□ -0.26
HDAC4-210ENST00000493582 TAOK2Q9UL54 1235 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 RIMBP3CA6NJZ7 1639 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 RIMBP3BA6NNM3 1639 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 RIMBP3Q9UFD9 1639 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 GOLGA6L9A6NEM1 432 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 AMPHP49418 695 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 CASP8Q14790 479 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 HSP90B2PQ58FF3 399 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 MICALL1Q8N3F8 863 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 TC2NQ8N9U0 490 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 FAM204AQ9H8W3 233 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 PEAK1Q9H792 1746 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 A0A0G2JLW4 131 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 VSNL1P62760 191 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 PNOCQ13519 176 aa13.44□□□□□ -0.26
HDAC4-210ENST00000493582 DHX32Q7L7V1 743 aaKnown RBP13.44□□□□□ -0.26
HDAC4-210ENST00000493582 KCNQ3O43525 872 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms