RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 CERS5Q8N5B7 392 aa16.81■□□□□ 0.28
HDAC3-213ENST00000492506 MTMR14Q8NCE2 650 aa16.81■□□□□ 0.28
HDAC3-213ENST00000492506 SLC10A4Q96EP9 437 aa16.81■□□□□ 0.28
HDAC3-213ENST00000492506 WNK4Q96J92 1243 aa16.81■□□□□ 0.28
HDAC3-213ENST00000492506 PCDHAC2Q9Y5I4 1007 aa16.81■□□□□ 0.28
HDAC3-213ENST00000492506 CAP1Q01518 475 aa16.8■□□□□ 0.28
HDAC3-213ENST00000492506 INTS3Q68E01 1043 aaKnown RBP16.8■□□□□ 0.28
HDAC3-213ENST00000492506 UBE3BQ7Z3V4 1068 aa16.8■□□□□ 0.28
HDAC3-213ENST00000492506 PLA2G12BQ9BX93 195 aa16.8■□□□□ 0.28
HDAC3-213ENST00000492506 ANKRD2Q9GZV1 360 aa16.8■□□□□ 0.28
HDAC3-213ENST00000492506 CD209Q9NNX6 404 aa16.8■□□□□ 0.28
HDAC3-213ENST00000492506 CACNA1FO60840 1977 aa16.8■□□□□ 0.28
HDAC3-213ENST00000492506 CSF1RP07333 972 aa16.79■□□□□ 0.28
HDAC3-213ENST00000492506 ITGA6P23229 1130 aa16.79■□□□□ 0.28
HDAC3-213ENST00000492506 IGHMBP2P38935 993 aaKnown RBP16.79■□□□□ 0.28
HDAC3-213ENST00000492506 CASP7P55210 303 aa16.79■□□□□ 0.28
HDAC3-213ENST00000492506 CALD1Q05682 793 aaKnown RBP16.79■□□□□ 0.28
HDAC3-213ENST00000492506 PTPN22Q9Y2R2 807 aa16.79■□□□□ 0.28
HDAC3-213ENST00000492506 AOX1Q06278 1338 aa16.78■□□□□ 0.28
HDAC3-213ENST00000492506 UNCXA6NJT0 531 aa16.78■□□□□ 0.28
HDAC3-213ENST00000492506 SNAP23O00161 211 aa16.78■□□□□ 0.28
HDAC3-213ENST00000492506 GJA5P36382 358 aa16.78■□□□□ 0.28
HDAC3-213ENST00000492506 NEXNQ0ZGT2 675 aa16.78■□□□□ 0.28
HDAC3-213ENST00000492506 DDX10Q13206 875 aaKnown RBP16.78■□□□□ 0.28
HDAC3-213ENST00000492506 DLGAP5Q15398 846 aa16.78■□□□□ 0.28
HDAC3-213ENST00000492506 G2E3Q7L622 706 aa16.78■□□□□ 0.28
HDAC3-213ENST00000492506 PPP2R3BQ9Y5P8 575 aa16.78■□□□□ 0.28
HDAC3-213ENST00000492506 PPP1R12BO60237 982 aaPredicted RBP16.77■□□□□ 0.28
HDAC3-213ENST00000492506 CHRNDQ07001 517 aa16.77■□□□□ 0.28
HDAC3-213ENST00000492506 CRHR2Q13324 411 aa16.77■□□□□ 0.28
HDAC3-213ENST00000492506 CD99L2Q8TCZ2 262 aa16.77■□□□□ 0.28
HDAC3-213ENST00000492506 ARMC5Q96C12 935 aa16.77■□□□□ 0.28
HDAC3-213ENST00000492506 PRMT6Q96LA8 375 aaPredicted RBP16.77■□□□□ 0.28
HDAC3-213ENST00000492506 PTPN18Q99952 460 aa16.77■□□□□ 0.28
HDAC3-213ENST00000492506 CHMP4AQ9BY43 222 aa16.77■□□□□ 0.28
HDAC3-213ENST00000492506 CEP290O15078 2479 aa16.77■□□□□ 0.27
HDAC3-213ENST00000492506 SZT2Q5T011 3432 aa16.77■□□□□ 0.27
HDAC3-213ENST00000492506 TESPA1A2RU30 521 aaPredicted RBP16.76■□□□□ 0.27
HDAC3-213ENST00000492506 USP2O75604 605 aaPredicted RBP16.76■□□□□ 0.27
HDAC3-213ENST00000492506 GCKRQ14397 625 aa16.76■□□□□ 0.27
HDAC3-213ENST00000492506 NBPF12Q5TAG4 269 aaPredicted RBP16.76■□□□□ 0.27
HDAC3-213ENST00000492506 C15orf52Q6ZUT6 534 aaKnown RBP16.76■□□□□ 0.27
HDAC3-213ENST00000492506 ERO1AQ96HE7 468 aa16.76■□□□□ 0.27
HDAC3-213ENST00000492506 MPHOSPH8Q99549 860 aa16.76■□□□□ 0.27
HDAC3-213ENST00000492506 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.76■□□□□ 0.27
HDAC3-213ENST00000492506 SPDYE2BA6NHP3 402 aa16.75■□□□□ 0.27
HDAC3-213ENST00000492506 SPDYE6P0CI01 402 aa16.75■□□□□ 0.27
HDAC3-213ENST00000492506 EN2P19622 333 aaPredicted RBP16.75■□□□□ 0.27
HDAC3-213ENST00000492506 CFAP100Q494V2 611 aa16.75■□□□□ 0.27
HDAC3-213ENST00000492506 CLRN2A0PK11 232 aa16.74■□□□□ 0.27
HDAC3-213ENST00000492506 TAF5LO75529 589 aa16.74■□□□□ 0.27
HDAC3-213ENST00000492506 IL1R1P14778 569 aa16.74■□□□□ 0.27
HDAC3-213ENST00000492506 SUPT20HL1Q3ZLR7 823 aa16.74■□□□□ 0.27
HDAC3-213ENST00000492506 TSR2Q969E8 191 aaKnown RBP16.74■□□□□ 0.27
HDAC3-213ENST00000492506 ARAP2Q8WZ64 1704 aa16.73■□□□□ 0.27
HDAC3-213ENST00000492506 ZSWIM8A7E2V4 1837 aa16.73■□□□□ 0.27
HDAC3-213ENST00000492506 F8W031 263 aaPredicted RBP16.73■□□□□ 0.27
HDAC3-213ENST00000492506 KCNJ4P48050 445 aa16.73■□□□□ 0.27
HDAC3-213ENST00000492506 FXR1P51114 621 aaKnown RBP eCLIP16.73■□□□□ 0.27
HDAC3-213ENST00000492506 FKBP1AP62942 108 aaKnown RBP16.73■□□□□ 0.27
HDAC3-213ENST00000492506 HELBQ8NG08 1087 aaPredicted RBP16.73■□□□□ 0.27
HDAC3-213ENST00000492506 STK31Q9BXU1 1019 aa16.73■□□□□ 0.27
HDAC3-213ENST00000492506 EFCC1Q9HA90 598 aa16.73■□□□□ 0.27
HDAC3-213ENST00000492506 SLC4A2P04920 1241 aa16.72■□□□□ 0.27
HDAC3-213ENST00000492506 SP3Q02447 781 aa16.72■□□□□ 0.27
HDAC3-213ENST00000492506 RASA3Q14644 834 aa16.72■□□□□ 0.27
HDAC3-213ENST00000492506 OTUD7BQ6GQQ9 843 aa16.72■□□□□ 0.27
HDAC3-213ENST00000492506 ANKRD13AQ8IZ07 590 aa16.72■□□□□ 0.27
HDAC3-213ENST00000492506 PRKRIP1Q9H875 184 aaPredicted RBP16.72■□□□□ 0.27
HDAC3-213ENST00000492506 MYO1BO43795 1136 aa16.71■□□□□ 0.27
HDAC3-213ENST00000492506 IREB2P48200 963 aaKnown RBP16.71■□□□□ 0.27
HDAC3-213ENST00000492506 ZNF333Q96JL9 665 aa16.71■□□□□ 0.27
HDAC3-213ENST00000492506 MS4A4AQ96JQ5 239 aa16.71■□□□□ 0.27
HDAC3-213ENST00000492506 VEZTQ9HBM0 779 aa16.71■□□□□ 0.27
HDAC3-213ENST00000492506 ANKRD18BA2A2Z9 1011 aa16.7■□□□□ 0.26
HDAC3-213ENST00000492506 FOXO4P98177 505 aa16.7■□□□□ 0.26
HDAC3-213ENST00000492506 TWISTNBQ3B726 338 aaPredicted RBP16.7■□□□□ 0.26
HDAC3-213ENST00000492506 LINS1Q8NG48 757 aa16.7■□□□□ 0.26
HDAC3-213ENST00000492506 OPTNQ96CV9 577 aa16.7■□□□□ 0.26
HDAC3-213ENST00000492506 TEPSINQ96N21 525 aa16.7■□□□□ 0.26
HDAC3-213ENST00000492506 JAG2Q9Y219 1238 aa16.7■□□□□ 0.26
HDAC3-213ENST00000492506 TRIOBPQ9H2D6 2365 aa16.7■□□□□ 0.26
HDAC3-213ENST00000492506 FLIIQ13045 1269 aa16.69■□□□□ 0.26
HDAC3-213ENST00000492506 ZNF804AQ7Z570 1209 aa16.69■□□□□ 0.26
HDAC3-213ENST00000492506 CDAN1Q8IWY9 1227 aa16.69■□□□□ 0.26
HDAC3-213ENST00000492506 DNAAF4Q8WXU2 420 aa16.69■□□□□ 0.26
HDAC3-213ENST00000492506 ELP3Q9H9T3 547 aa16.69■□□□□ 0.26
HDAC3-213ENST00000492506 RANBP2P49792 3224 aaKnown RBP16.69■□□□□ 0.26
HDAC3-213ENST00000492506 FAM205AQ6ZU69 1335 aa16.69■□□□□ 0.26
HDAC3-213ENST00000492506 SPDYE2Q495Y8 402 aa16.68■□□□□ 0.26
HDAC3-213ENST00000492506 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.68■□□□□ 0.26
HDAC3-213ENST00000492506 CNKSR2Q8WXI2 1034 aa16.68■□□□□ 0.26
HDAC3-213ENST00000492506 BRI3BPQ8WY22 251 aa16.68■□□□□ 0.26
HDAC3-213ENST00000492506 MYH16Q9H6N6 1097 aa16.68■□□□□ 0.26
HDAC3-213ENST00000492506 ZNF70Q9UC06 446 aaPredicted RBP16.67■□□□□ 0.26
HDAC3-213ENST00000492506 COLQQ9Y215 455 aaPredicted RBP16.67■□□□□ 0.26
HDAC3-213ENST00000492506 PTCH2Q9Y6C5 1203 aa16.67■□□□□ 0.26
HDAC3-213ENST00000492506 IFIT5Q13325 482 aaKnown RBP16.66■□□□□ 0.26
HDAC3-213ENST00000492506 FKBP5Q13451 457 aaPredicted RBP16.66■□□□□ 0.26
HDAC3-213ENST00000492506 CCDC27Q2M243 656 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms