RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CCDC114Q96M63 670 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 GNA11P29992 359 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 GNG11P61952 73 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 SNW1Q13573 536 aaKnown RBP14.84□□□□□ -0.03
COL6A3-212ENST00000491769 FAM47CQ5HY64 1035 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 CHST3Q7LGC8 479 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 ANAPC4Q9UJX5 808 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 CCDC65Q8IXS2 484 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 DDX39AO00148 427 aaKnown RBP14.84□□□□□ -0.03
COL6A3-212ENST00000491769 ZSCAN16Q9H4T2 348 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-212ENST00000491769 NCAPD3P42695 1498 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 MAGI1Q96QZ7 1491 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-212ENST00000491769 TRPC3Q13507 836 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 CCDC6Q16204 474 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 DPP8Q6V1X1 898 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-212ENST00000491769 CFAP57Q96MR6 1250 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 CGNQ9P2M7 1197 aaKnown RBP14.84□□□□□ -0.03
COL6A3-212ENST00000491769 PPP1R21Q6ZMI0 780 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 CCDC87Q9NVE4 849 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 GGA1Q9UJY5 639 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 AGTPBP1Q9UPW5 1226 aa14.84□□□□□ -0.03
COL6A3-212ENST00000491769 CNGA1P29973 690 aa14.83□□□□□ -0.03
COL6A3-212ENST00000491769 BAG6P46379 1132 aa14.83□□□□□ -0.03
COL6A3-212ENST00000491769 STRN3Q13033 797 aa14.83□□□□□ -0.03
COL6A3-212ENST00000491769 RAPGEF1Q13905 1077 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 BCS1LQ9Y276 419 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 NKTRP30414 1462 aaKnown RBP14.83□□□□□ -0.04
COL6A3-212ENST00000491769 STX10O60499 249 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 IRX3P78415 501 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-212ENST00000491769 CEP135Q66GS9 1140 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 NIM1KQ8IY84 436 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 LMBR1Q8WVP7 490 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 PA2G4Q9UQ80 394 aaKnown RBP14.83□□□□□ -0.04
COL6A3-212ENST00000491769 TRIM75PA6NK02 468 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 IFT74Q96LB3 600 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 ZKSCAN3Q9BRR0 538 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 ZBTB16Q05516 673 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 KSR2Q6VAB6 950 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 TNPO1Q92973 898 aaKnown RBP14.83□□□□□ -0.04
COL6A3-212ENST00000491769 FRMD4BQ9Y2L6 1034 aa14.83□□□□□ -0.04
COL6A3-212ENST00000491769 ZNF165P49910 485 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 FAM98CQ17RN3 349 aaKnown RBP14.82□□□□□ -0.04
COL6A3-212ENST00000491769 NEK11Q8NG66 645 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 HOOK2Q96ED9 719 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 ANO3Q9BYT9 981 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 E7EVH7 732 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 CFAP157Q5JU67 520 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 RBM8AQ9Y5S9 174 aaKnown RBP14.82□□□□□ -0.04
COL6A3-212ENST00000491769 NEMFO60524 1076 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 PRPF31Q8WWY3 499 aaKnown RBP14.82□□□□□ -0.04
COL6A3-212ENST00000491769 AZI2Q9H6S1 392 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 SMIM23A6NLE4 172 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 ZBED4O75132 1171 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 ATP2A2P16615 1042 aaKnown RBP14.82□□□□□ -0.04
COL6A3-212ENST00000491769 SMTNP53814 917 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 TBC1D9Q6ZT07 1266 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 RBM27Q9P2N5 1060 aaKnown RBP14.82□□□□□ -0.04
COL6A3-212ENST00000491769 KAT6BQ8WYB5 2073 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 KIF14Q15058 1648 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 RXRAP19793 462 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 MAEAQ7L5Y9 396 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 CPXCR1Q8N123 301 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 SPC25Q9HBM1 224 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 CC2D2AQ9P2K1 1620 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 TOPBP1Q92547 1522 aa14.82□□□□□ -0.04
COL6A3-212ENST00000491769 DENND2AQ9ULE3 1009 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 RIOK3O14730 519 aaKnown RBP14.81□□□□□ -0.04
COL6A3-212ENST00000491769 MAPK8IP2Q13387 824 aaPredicted RBP14.81□□□□□ -0.04
COL6A3-212ENST00000491769 KCNG4Q8TDN1 519 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 PCDH11XQ9BZA7 1347 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 PCDH11YQ9BZA8 1340 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 PPP1R7Q15435 360 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 SMC6Q96SB8 1091 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 SELENOSQ9BQE4 189 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 DTHD1Q6ZMT9 781 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 RNF113AO15541 343 aaKnown RBP14.81□□□□□ -0.04
COL6A3-212ENST00000491769 GMNNO75496 209 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 TTC22Q5TAA0 569 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 CCDC25Q86WR0 208 aa14.81□□□□□ -0.04
COL6A3-212ENST00000491769 TCP10Q12799 353 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 PPP2R5DQ14738 602 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 CCDC24Q8N4L8 307 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 TACC1O75410 805 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 LETM2Q2VYF4 491 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 CCDC184Q52MB2 194 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 C20orf194Q5TEA3 1177 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 ARHGAP27Q6ZUM4 889 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 RNF169Q8NCN4 708 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 GSDMBQ8TAX9 411 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 MSL1Q68DK7 614 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 NSRP1Q9H0G5 558 aaKnown RBP14.8□□□□□ -0.04
COL6A3-212ENST00000491769 BICDL2A1A5D9 508 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 UAP1Q16222 522 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-212ENST00000491769 SUPT20HQ8NEM7 779 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 FAM200AQ8TCP9 573 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 FAM204AQ9H8W3 233 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 PLCH2O75038 1416 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 H7C1D1 291 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 NMIQ13287 307 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-212ENST00000491769 PPP2R5CQ13362 524 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms