RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 MEGF11A6BM72 1044 aa9.22□□□□□ -0.93
SCN1A-206ENST00000491429 GAS2O43903 313 aaKnown RBP9.22□□□□□ -0.93
SCN1A-206ENST00000491429 YBX3P16989 372 aaKnown RBP eCLIP9.22□□□□□ -0.93
SCN1A-206ENST00000491429 C19orf57Q0VDD7 668 aa9.22□□□□□ -0.93
SCN1A-206ENST00000491429 ADGRE2Q9UHX3 823 aa9.22□□□□□ -0.93
SCN1A-206ENST00000491429 PDGFAP04085 211 aa9.21□□□□□ -0.94
SCN1A-206ENST00000491429 C8orf34Q49A92 452 aa9.21□□□□□ -0.94
SCN1A-206ENST00000491429 PIM2Q9P1W9 311 aa9.21□□□□□ -0.94
SCN1A-206ENST00000491429 SOX1O00570 391 aaPredicted RBP9.2□□□□□ -0.94
SCN1A-206ENST00000491429 RPLP1P05386 114 aaKnown RBP9.2□□□□□ -0.94
SCN1A-206ENST00000491429 ARL4DP49703 201 aa9.2□□□□□ -0.94
SCN1A-206ENST00000491429 VN1R5Q7Z5H4 357 aa9.2□□□□□ -0.94
SCN1A-206ENST00000491429 FBXL6Q8N531 539 aa9.2□□□□□ -0.94
SCN1A-206ENST00000491429 TMEM102Q8N9M5 508 aaPredicted RBP9.2□□□□□ -0.94
SCN1A-206ENST00000491429 HELQQ8TDG4 1101 aa9.2□□□□□ -0.94
SCN1A-206ENST00000491429 DLGAP3O95886 979 aa9.19□□□□□ -0.94
SCN1A-206ENST00000491429 F13BP05160 661 aa9.19□□□□□ -0.94
SCN1A-206ENST00000491429 SHISA5Q8N114 240 aa9.19□□□□□ -0.94
SCN1A-206ENST00000491429 NXPE3Q969Y0 559 aa9.19□□□□□ -0.94
SCN1A-206ENST00000491429 OSMRQ99650 979 aa9.19□□□□□ -0.94
SCN1A-206ENST00000491429 ZKSCAN3Q9BRR0 538 aa9.19□□□□□ -0.94
SCN1A-206ENST00000491429 USP26Q9BXU7 913 aa9.19□□□□□ -0.94
SCN1A-206ENST00000491429 TMPRSS13Q9BYE2 586 aa9.19□□□□□ -0.94
SCN1A-206ENST00000491429 PCSK2P16519 638 aa9.18□□□□□ -0.94
SCN1A-206ENST00000491429 RXRBP28702 533 aa9.18□□□□□ -0.94
SCN1A-206ENST00000491429 IKBKEQ14164 716 aa9.18□□□□□ -0.94
SCN1A-206ENST00000491429 NUTM2GQ5VZR2 741 aa9.18□□□□□ -0.94
SCN1A-206ENST00000491429 ABI1Q8IZP0 508 aa9.18□□□□□ -0.94
SCN1A-206ENST00000491429 C12orf50Q8NA57 414 aaPredicted RBP9.18□□□□□ -0.94
SCN1A-206ENST00000491429 BSNDQ8WZ55 320 aa9.18□□□□□ -0.94
SCN1A-206ENST00000491429 LOC100289279A0A1B0GTE1 492 aa9.17□□□□□ -0.94
SCN1A-206ENST00000491429 EREGO14944 169 aa9.17□□□□□ -0.94
SCN1A-206ENST00000491429 TIAF1O95411 115 aa9.17□□□□□ -0.94
SCN1A-206ENST00000491429 NOM1Q5C9Z4 860 aaKnown RBP9.17□□□□□ -0.94
SCN1A-206ENST00000491429 PBXIP1Q96AQ6 731 aa9.17□□□□□ -0.94
SCN1A-206ENST00000491429 ATG3Q9NT62 314 aa9.17□□□□□ -0.94
SCN1A-206ENST00000491429 LEMD3Q9Y2U8 911 aa9.17□□□□□ -0.94
SCN1A-206ENST00000491429 DRD2P14416 443 aa9.16□□□□□ -0.94
SCN1A-206ENST00000491429 MPSTP25325 297 aa9.16□□□□□ -0.94
SCN1A-206ENST00000491429 MZF1P28698 734 aaPredicted RBP9.16□□□□□ -0.94
SCN1A-206ENST00000491429 EIF1AXP47813 144 aaKnown RBP9.16□□□□□ -0.94
SCN1A-206ENST00000491429 MSMPQ1L6U9 139 aa9.16□□□□□ -0.94
SCN1A-206ENST00000491429 SMG8Q8ND04 991 aaKnown RBP9.16□□□□□ -0.94
SCN1A-206ENST00000491429 PMEPA1Q969W9 287 aa9.16□□□□□ -0.94
SCN1A-206ENST00000491429 TTC16Q8NEE8 873 aa9.15□□□□□ -0.94
SCN1A-206ENST00000491429 OSBPL1AQ9BXW6 950 aa9.15□□□□□ -0.94
SCN1A-206ENST00000491429 SUGCTQ9HAC7 445 aa9.15□□□□□ -0.94
SCN1A-206ENST00000491429 FOSL1P15407 271 aa9.14□□□□□ -0.95
SCN1A-206ENST00000491429 CDPF1Q6NVV7 123 aa9.14□□□□□ -0.95
SCN1A-206ENST00000491429 GIMAP7Q8NHV1 300 aa9.14□□□□□ -0.95
SCN1A-206ENST00000491429 CYP4F12Q9HCS2 524 aa9.14□□□□□ -0.95
SCN1A-206ENST00000491429 POLIQ9UNA4 740 aa9.14□□□□□ -0.95
SCN1A-206ENST00000491429 ANGEL1Q9UNK9 670 aaKnown RBP9.14□□□□□ -0.95
SCN1A-206ENST00000491429 FAM95CA0A1B0GW59 222 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 TNFRSF21O75509 655 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 MTMR3Q13615 1198 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 NFKBIBQ15653 356 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 NFXL1Q6ZNB6 911 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 ASAP3Q8TDY4 903 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 GTF3C2Q8WUA4 911 aaPredicted RBP9.13□□□□□ -0.95
SCN1A-206ENST00000491429 FBLIM1Q8WUP2 373 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 LATS2Q9NRM7 1088 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 CCDC39Q9UFE4 941 aa9.13□□□□□ -0.95
SCN1A-206ENST00000491429 FOXD3Q9UJU5 478 aaPredicted RBP9.13□□□□□ -0.95
SCN1A-206ENST00000491429 PHACTR2O75167 634 aa9.12□□□□□ -0.95
SCN1A-206ENST00000491429 ESRRAP11474 423 aaPredicted RBP9.12□□□□□ -0.95
SCN1A-206ENST00000491429 SOX17Q9H6I2 414 aaPredicted RBP9.12□□□□□ -0.95
SCN1A-206ENST00000491429 EDN3P14138 238 aa9.11□□□□□ -0.95
SCN1A-206ENST00000491429 ADMP35318 185 aa9.11□□□□□ -0.95
SCN1A-206ENST00000491429 USP11P51784 963 aa9.11□□□□□ -0.95
SCN1A-206ENST00000491429 PAOXQ6QHF9 649 aa9.11□□□□□ -0.95
SCN1A-206ENST00000491429 C2CD4AQ8NCU7 369 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-206ENST00000491429 BHLHE41Q9C0J9 482 aaPredicted RBP9.11□□□□□ -0.95
SCN1A-206ENST00000491429 METTL12A8MUP2 240 aa9.1□□□□□ -0.95
SCN1A-206ENST00000491429 GSTM4Q03013 218 aa9.1□□□□□ -0.95
SCN1A-206ENST00000491429 EXOSC6Q5RKV6 272 aaKnown RBP9.1□□□□□ -0.95
SCN1A-206ENST00000491429 PEAR1Q5VY43 1037 aaPredicted RBP9.1□□□□□ -0.95
SCN1A-206ENST00000491429 PRNPP04156 253 aa9.09□□□□□ -0.95
SCN1A-206ENST00000491429 CPSF6Q16630 551 aaKnown RBP eCLIP9.09□□□□□ -0.95
SCN1A-206ENST00000491429 SNX29Q8TEQ0 813 aa9.09□□□□□ -0.95
SCN1A-206ENST00000491429 SOX4Q06945 474 aaPredicted RBP9.08□□□□□ -0.96
SCN1A-206ENST00000491429 CBLL1Q75N03 491 aa9.08□□□□□ -0.96
SCN1A-206ENST00000491429 TBC1D32Q96NH3 1257 aa9.08□□□□□ -0.96
SCN1A-206ENST00000491429 NRSN2Q9GZP1 204 aa9.08□□□□□ -0.96
SCN1A-206ENST00000491429 PRKAG2Q9UGJ0 569 aa9.08□□□□□ -0.96
SCN1A-206ENST00000491429 FAM170BA6NMN3 283 aa9.07□□□□□ -0.96
SCN1A-206ENST00000491429 FZD5Q13467 585 aa9.07□□□□□ -0.96
SCN1A-206ENST00000491429 AAMPQ13685 434 aa9.07□□□□□ -0.96
SCN1A-206ENST00000491429 COL19A1Q14993 1142 aa9.07□□□□□ -0.96
SCN1A-206ENST00000491429 ALKBH2Q6NS38 261 aa9.07□□□□□ -0.96
SCN1A-206ENST00000491429 ZAR1Q86SH2 424 aa9.07□□□□□ -0.96
SCN1A-206ENST00000491429 VSIG10LQ86VR7 867 aa9.07□□□□□ -0.96
SCN1A-206ENST00000491429 METTL22Q9BUU2 404 aaPredicted RBP9.07□□□□□ -0.96
SCN1A-206ENST00000491429 ARID1BQ8NFD5 2236 aaPredicted RBP9.07□□□□□ -0.96
SCN1A-206ENST00000491429 CYP26A1O43174 497 aa9.06□□□□□ -0.96
SCN1A-206ENST00000491429 TP53INP2Q8IXH6 220 aa9.06□□□□□ -0.96
SCN1A-206ENST00000491429 EZH1Q92800 747 aaPredicted RBP9.06□□□□□ -0.96
SCN1A-206ENST00000491429 GATA6Q92908 595 aa9.06□□□□□ -0.96
SCN1A-206ENST00000491429 CCDC97Q96F63 343 aaPredicted RBP9.06□□□□□ -0.96
SCN1A-206ENST00000491429 CTSBP07858 339 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms