RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 TMEM130Q8N3G9 435 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 FOXD4L4Q8WXT5 416 aaPredicted RBP9.01□□□□□ -0.97
PTPN4-212ENST00000488896 DMRTB1Q96MA1 342 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 TRAIPQ9BWF2 469 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 SSBP4Q9BWG4 385 aaPredicted RBP9.01□□□□□ -0.97
PTPN4-212ENST00000488896 RBCK1Q9BYM8 510 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 BHLHE41Q9C0J9 482 aaPredicted RBP9.01□□□□□ -0.97
PTPN4-212ENST00000488896 DCTN4Q9UJW0 460 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 SOX1O00570 391 aaPredicted RBP9□□□□□ -0.97
PTPN4-212ENST00000488896 TM4SF5O14894 197 aa9□□□□□ -0.97
PTPN4-212ENST00000488896 IGHA2P01877 340 aa9□□□□□ -0.97
PTPN4-212ENST00000488896 C19orf57Q0VDD7 668 aa9□□□□□ -0.97
PTPN4-212ENST00000488896 SPRED3Q2MJR0 410 aa9□□□□□ -0.97
PTPN4-212ENST00000488896 ZC3HAV1Q7Z2W4 902 aaKnown RBP9□□□□□ -0.97
PTPN4-212ENST00000488896 EHD4Q9H223 541 aa9□□□□□ -0.97
PTPN4-212ENST00000488896 GADD45BO75293 160 aaPredicted RBP8.99□□□□□ -0.97
PTPN4-212ENST00000488896 GRIA4P48058 902 aa8.99□□□□□ -0.97
PTPN4-212ENST00000488896 WNT8BQ93098 351 aa8.99□□□□□ -0.97
PTPN4-212ENST00000488896 CCDC74AQ96AQ1 378 aa8.99□□□□□ -0.97
PTPN4-212ENST00000488896 TCF12Q99081 682 aa8.99□□□□□ -0.97
PTPN4-212ENST00000488896 OSGEPQ9NPF4 335 aa8.99□□□□□ -0.97
PTPN4-212ENST00000488896 A0A096LPE4 126 aa8.98□□□□□ -0.97
PTPN4-212ENST00000488896 A0A1W2PPZ6 126 aa8.98□□□□□ -0.97
PTPN4-212ENST00000488896 ITGB7P26010 798 aa8.98□□□□□ -0.97
PTPN4-212ENST00000488896 KIAA1211Q6ZU35 1233 aa8.98□□□□□ -0.97
PTPN4-212ENST00000488896 CCNJLQ8IV13 435 aa8.98□□□□□ -0.97
PTPN4-212ENST00000488896 CSRNP1Q96S65 589 aa8.98□□□□□ -0.97
PTPN4-212ENST00000488896 AEBP1Q8IUX7 1158 aa8.97□□□□□ -0.97
PTPN4-212ENST00000488896 EPS8L3Q8TE67 593 aaKnown RBP8.97□□□□□ -0.97
PTPN4-212ENST00000488896 USP26Q9BXU7 913 aa8.97□□□□□ -0.97
PTPN4-212ENST00000488896 DNAJC25Q9H1X3 360 aa8.97□□□□□ -0.97
PTPN4-212ENST00000488896 ESRRAP11474 423 aaPredicted RBP8.96□□□□□ -0.98
PTPN4-212ENST00000488896 GSTM4Q03013 218 aa8.96□□□□□ -0.98
PTPN4-212ENST00000488896 KIAA0319Q5VV43 1072 aa8.96□□□□□ -0.98
PTPN4-212ENST00000488896 DZIP1LQ8IYY4 767 aaKnown RBP8.96□□□□□ -0.98
PTPN4-212ENST00000488896 UBL7Q96S82 380 aaPredicted RBP8.96□□□□□ -0.98
PTPN4-212ENST00000488896 H2AFB1P0C5Y9 115 aa8.95□□□□□ -0.98
PTPN4-212ENST00000488896 H2AFB2P0C5Z0 115 aa8.95□□□□□ -0.98
PTPN4-212ENST00000488896 PDIA4P13667 645 aaKnown RBP8.95□□□□□ -0.98
PTPN4-212ENST00000488896 PLCB3Q01970 1234 aa8.95□□□□□ -0.98
PTPN4-212ENST00000488896 PCDH1Q08174 1060 aa8.95□□□□□ -0.98
PTPN4-212ENST00000488896 PRSS36Q5K4E3 855 aa8.95□□□□□ -0.98
PTPN4-212ENST00000488896 ALKBH8Q96BT7 664 aaKnown RBP8.95□□□□□ -0.98
PTPN4-212ENST00000488896 RUSC1Q9BVN2 902 aa8.95□□□□□ -0.98
PTPN4-212ENST00000488896 PI16Q6UXB8 463 aa8.94□□□□□ -0.98
PTPN4-212ENST00000488896 CLEC4MQ9H2X3 399 aaPredicted RBP8.94□□□□□ -0.98
PTPN4-212ENST00000488896 PNMA6FA0A0J9YX94 578 aa8.93□□□□□ -0.98
PTPN4-212ENST00000488896 ZNF423Q2M1K9 1284 aa8.93□□□□□ -0.98
PTPN4-212ENST00000488896 Q6ZS46 218 aa8.93□□□□□ -0.98
PTPN4-212ENST00000488896 CEP41Q9BYV8 373 aa8.93□□□□□ -0.98
PTPN4-212ENST00000488896 SART1O43290 800 aaKnown RBP8.92□□□□□ -0.98
PTPN4-212ENST00000488896 MAPK8P45983 427 aa8.92□□□□□ -0.98
PTPN4-212ENST00000488896 PRR23CQ6ZRP0 262 aa8.92□□□□□ -0.98
PTPN4-212ENST00000488896 ZSCAN29Q8IWY8 852 aaPredicted RBP8.92□□□□□ -0.98
PTPN4-212ENST00000488896 RNF208Q9H0X6 261 aa8.92□□□□□ -0.98
PTPN4-212ENST00000488896 NLRP2Q9NX02 1062 aa8.92□□□□□ -0.98
PTPN4-212ENST00000488896 TREHO43280 583 aa8.91□□□□□ -0.98
PTPN4-212ENST00000488896 GRM2Q14416 872 aa8.91□□□□□ -0.98
PTPN4-212ENST00000488896 DSC3Q14574 896 aa8.91□□□□□ -0.98
PTPN4-212ENST00000488896 FDX2Q6P4F2 183 aa8.91□□□□□ -0.98
PTPN4-212ENST00000488896 UTP4Q969X6 686 aaKnown RBP8.91□□□□□ -0.98
PTPN4-212ENST00000488896 SOX17Q9H6I2 414 aaPredicted RBP8.91□□□□□ -0.98
PTPN4-212ENST00000488896 ABCB6Q9NP58 842 aa8.91□□□□□ -0.98
PTPN4-212ENST00000488896 LOC100289279A0A1B0GTE1 492 aa8.9□□□□□ -0.98
PTPN4-212ENST00000488896 ZNF157P51786 506 aaPredicted RBP8.9□□□□□ -0.98
PTPN4-212ENST00000488896 ZMYM1Q5SVZ6 1142 aa8.9□□□□□ -0.98
PTPN4-212ENST00000488896 ZNF576Q9H609 170 aa8.9□□□□□ -0.98
PTPN4-212ENST00000488896 TMEM238LA0A1B0GVL6 79 aa8.89□□□□□ -0.99
PTPN4-212ENST00000488896 PATL2C9JE40 543 aaKnown RBP8.89□□□□□ -0.99
PTPN4-212ENST00000488896 DLGAP3O95886 979 aa8.89□□□□□ -0.99
PTPN4-212ENST00000488896 PREPP48147 710 aa8.89□□□□□ -0.99
PTPN4-212ENST00000488896 NUTM2GQ5VZR2 741 aa8.89□□□□□ -0.99
PTPN4-212ENST00000488896 ARMC10Q8N2F6 343 aa8.89□□□□□ -0.99
PTPN4-212ENST00000488896 TRAK1Q9UPV9 953 aa8.89□□□□□ -0.99
PTPN4-212ENST00000488896 DHX15O43143 795 aaKnown RBP8.88□□□□□ -0.99
PTPN4-212ENST00000488896 FCGRTP55899 365 aa8.88□□□□□ -0.99
PTPN4-212ENST00000488896 ENOX2Q16206 610 aaKnown RBP8.88□□□□□ -0.99
PTPN4-212ENST00000488896 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.88□□□□□ -0.99
PTPN4-212ENST00000488896 ANKRD34AQ69YU3 496 aa8.88□□□□□ -0.99
PTPN4-212ENST00000488896 DTHD1Q6ZMT9 781 aa8.88□□□□□ -0.99
PTPN4-212ENST00000488896 C12orf50Q8NA57 414 aaPredicted RBP8.88□□□□□ -0.99
PTPN4-212ENST00000488896 FAM46AQ96IP4 442 aaKnown RBP8.88□□□□□ -0.99
PTPN4-212ENST00000488896 SETDB2Q96T68 719 aa8.88□□□□□ -0.99
PTPN4-212ENST00000488896 STOML1Q9UBI4 398 aa8.88□□□□□ -0.99
PTPN4-212ENST00000488896 RAXQ9Y2V3 346 aa8.88□□□□□ -0.99
PTPN4-212ENST00000488896 ITPKAP23677 461 aa8.87□□□□□ -0.99
PTPN4-212ENST00000488896 MAOBP27338 520 aa8.87□□□□□ -0.99
PTPN4-212ENST00000488896 PRPF40BQ6NWY9 871 aaKnown RBP8.87□□□□□ -0.99
PTPN4-212ENST00000488896 GLIS3Q8NEA6 775 aa8.87□□□□□ -0.99
PTPN4-212ENST00000488896 ASB16Q96NS5 453 aa8.87□□□□□ -0.99
PTPN4-212ENST00000488896 BCO2Q9BYV7 579 aa8.87□□□□□ -0.99
PTPN4-212ENST00000488896 KCNF1Q9H3M0 494 aa8.87□□□□□ -0.99
PTPN4-212ENST00000488896 GAS2O43903 313 aaKnown RBP8.86□□□□□ -0.99
PTPN4-212ENST00000488896 B3GALT4O96024 378 aa8.86□□□□□ -0.99
PTPN4-212ENST00000488896 POU4F3Q15319 338 aa8.86□□□□□ -0.99
PTPN4-212ENST00000488896 NXPE4Q6UWF7 544 aa8.86□□□□□ -0.99
PTPN4-212ENST00000488896 MYRFLQ96LU7 910 aa8.86□□□□□ -0.99
PTPN4-212ENST00000488896 PPP4R2Q9NY27 417 aa8.86□□□□□ -0.99
PTPN4-212ENST00000488896 WWC3Q9ULE0 1092 aa8.86□□□□□ -0.99
PTPN4-212ENST00000488896 SCO2A0A1W2PP80 73 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms