RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 MKNK1Q9BUB5 465 aa7.77□□□□□ -1.17
SMC4-220ENST00000488017 LEMD3Q9Y2U8 911 aa7.77□□□□□ -1.17
SMC4-220ENST00000488017 ZBTB39O15060 712 aa7.76□□□□□ -1.17
SMC4-220ENST00000488017 NLRP12P59046 1061 aa7.76□□□□□ -1.17
SMC4-220ENST00000488017 NAA30Q147X3 362 aaPredicted RBP7.76□□□□□ -1.17
SMC4-220ENST00000488017 ZNF648Q5T619 568 aaPredicted RBP7.76□□□□□ -1.17
SMC4-220ENST00000488017 CAPN12Q6ZSI9 719 aa7.76□□□□□ -1.17
SMC4-220ENST00000488017 VSIG10LQ86VR7 867 aa7.76□□□□□ -1.17
SMC4-220ENST00000488017 TMEM63CQ9P1W3 806 aa7.76□□□□□ -1.17
SMC4-220ENST00000488017 NFKBIEO00221 500 aa7.75□□□□□ -1.17
SMC4-220ENST00000488017 PRKCSHP14314 528 aaPredicted RBP7.75□□□□□ -1.17
SMC4-220ENST00000488017 FOSL1P15407 271 aa7.75□□□□□ -1.17
SMC4-220ENST00000488017 XKR5Q6UX68 686 aa7.75□□□□□ -1.17
SMC4-220ENST00000488017 ZNF438Q7Z4V0 828 aa7.75□□□□□ -1.17
SMC4-220ENST00000488017 TP53INP2Q8IXH6 220 aa7.75□□□□□ -1.17
SMC4-220ENST00000488017 DZANK1Q9NVP4 752 aa7.75□□□□□ -1.17
SMC4-220ENST00000488017 PDE2AO00408 941 aaPredicted RBP7.74□□□□□ -1.17
SMC4-220ENST00000488017 C19orf57Q0VDD7 668 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 ZNF124Q15973 351 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 SMG8Q8ND04 991 aaKnown RBP7.74□□□□□ -1.17
SMC4-220ENST00000488017 STK32AQ8WU08 396 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 SLC7A3Q8WY07 619 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 NUDT16Q96DE0 195 aaKnown RBP7.74□□□□□ -1.17
SMC4-220ENST00000488017 OSBPL1AQ9BXW6 950 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 SUGCTQ9HAC7 445 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 CNTN3Q9P232 1028 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 KANSL3Q9P2N6 904 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 SOX13Q9UN79 622 aa7.74□□□□□ -1.17
SMC4-220ENST00000488017 F13BP05160 661 aa7.73□□□□□ -1.17
SMC4-220ENST00000488017 SGO2Q562F6 1265 aa7.73□□□□□ -1.17
SMC4-220ENST00000488017 NUTM2GQ5VZR2 741 aa7.73□□□□□ -1.17
SMC4-220ENST00000488017 PMEPA1Q969W9 287 aa7.73□□□□□ -1.17
SMC4-220ENST00000488017 METTL22Q9BUU2 404 aaPredicted RBP7.73□□□□□ -1.17
SMC4-220ENST00000488017 CES1P23141 567 aa7.72□□□□□ -1.17
SMC4-220ENST00000488017 TMEM102Q8N9M5 508 aaPredicted RBP7.72□□□□□ -1.17
SMC4-220ENST00000488017 TMPRSS13Q9BYE2 586 aa7.72□□□□□ -1.17
SMC4-220ENST00000488017 CYP4F12Q9HCS2 524 aa7.72□□□□□ -1.17
SMC4-220ENST00000488017 TIAF1O95411 115 aa7.71□□□□□ -1.18
SMC4-220ENST00000488017 RXRBP28702 533 aa7.71□□□□□ -1.18
SMC4-220ENST00000488017 PAOXQ6QHF9 649 aa7.71□□□□□ -1.18
SMC4-220ENST00000488017 FBXL6Q8N531 539 aa7.71□□□□□ -1.18
SMC4-220ENST00000488017 C12orf50Q8NA57 414 aaPredicted RBP7.71□□□□□ -1.18
SMC4-220ENST00000488017 CLP1Q92989 425 aaKnown RBP7.71□□□□□ -1.18
SMC4-220ENST00000488017 FAM95CA0A1B0GW59 222 aa7.7□□□□□ -1.18
SMC4-220ENST00000488017 ATG7O95352 703 aa7.7□□□□□ -1.18
SMC4-220ENST00000488017 PAPLNO95428 1278 aa7.7□□□□□ -1.18
SMC4-220ENST00000488017 ACPPP15309 386 aa7.7□□□□□ -1.18
SMC4-220ENST00000488017 PCSK2P16519 638 aa7.7□□□□□ -1.18
SMC4-220ENST00000488017 C1orf127Q8N9H9 656 aa7.7□□□□□ -1.18
SMC4-220ENST00000488017 AGBL5Q8NDL9 886 aa7.7□□□□□ -1.18
SMC4-220ENST00000488017 BSNDQ8WZ55 320 aa7.7□□□□□ -1.18
SMC4-220ENST00000488017 SOX17Q9H6I2 414 aaPredicted RBP7.7□□□□□ -1.18
SMC4-220ENST00000488017 ZNF777Q9ULD5 760 aaPredicted RBP7.7□□□□□ -1.18
SMC4-220ENST00000488017 EIF4EBP3O60516 100 aaPredicted RBP7.69□□□□□ -1.18
SMC4-220ENST00000488017 IKBKEQ14164 716 aa7.69□□□□□ -1.18
SMC4-220ENST00000488017 KRTAP19-4Q3LI73 84 aa7.69□□□□□ -1.18
SMC4-220ENST00000488017 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.69□□□□□ -1.18
SMC4-220ENST00000488017 LOC100289279A0A1B0GTE1 492 aa7.68□□□□□ -1.18
SMC4-220ENST00000488017 SOX1O00570 391 aaPredicted RBP7.68□□□□□ -1.18
SMC4-220ENST00000488017 SRPK2P78362 688 aaKnown RBP7.68□□□□□ -1.18
SMC4-220ENST00000488017 NFKBIBQ15653 356 aa7.68□□□□□ -1.18
SMC4-220ENST00000488017 TMEM132AQ24JP5 1023 aa7.68□□□□□ -1.18
SMC4-220ENST00000488017 TMEM164Q5U3C3 297 aa7.68□□□□□ -1.18
SMC4-220ENST00000488017 HGSNATQ68CP4 663 aa7.68□□□□□ -1.18
SMC4-220ENST00000488017 NXPE3Q969Y0 559 aa7.68□□□□□ -1.18
SMC4-220ENST00000488017 BSDC1Q9NW68 430 aaPredicted RBP7.68□□□□□ -1.18
SMC4-220ENST00000488017 USP11P51784 963 aa7.67□□□□□ -1.18
SMC4-220ENST00000488017 EXOSC6Q5RKV6 272 aaKnown RBP7.67□□□□□ -1.18
SMC4-220ENST00000488017 KRTAP5-3Q6L8H2 238 aa7.67□□□□□ -1.18
SMC4-220ENST00000488017 VN1R5Q7Z5H4 357 aa7.67□□□□□ -1.18
SMC4-220ENST00000488017 TTC16Q8NEE8 873 aa7.67□□□□□ -1.18
SMC4-220ENST00000488017 EDEM1Q92611 657 aa7.67□□□□□ -1.18
SMC4-220ENST00000488017 HHIPQ96QV1 700 aa7.67□□□□□ -1.18
SMC4-220ENST00000488017 YIPF2Q9BWQ6 316 aa7.67□□□□□ -1.18
SMC4-220ENST00000488017 USP26Q9BXU7 913 aa7.67□□□□□ -1.18
SMC4-220ENST00000488017 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.67□□□□□ -1.18
SMC4-220ENST00000488017 CYP26A1O43174 497 aa7.66□□□□□ -1.18
SMC4-220ENST00000488017 TRPA1O75762 1119 aa7.66□□□□□ -1.18
SMC4-220ENST00000488017 FARP2O94887 1054 aaPredicted RBP7.66□□□□□ -1.18
SMC4-220ENST00000488017 PKN1Q16512 942 aa7.66□□□□□ -1.18
SMC4-220ENST00000488017 ATCAYQ86WG3 371 aa7.66□□□□□ -1.18
SMC4-220ENST00000488017 EZH1Q92800 747 aaPredicted RBP7.66□□□□□ -1.18
SMC4-220ENST00000488017 OSMRQ99650 979 aa7.66□□□□□ -1.18
SMC4-220ENST00000488017 CHRDQ9H2X0 955 aa7.66□□□□□ -1.18
SMC4-220ENST00000488017 PAK6Q9NQU5 681 aaPredicted RBP7.66□□□□□ -1.18
SMC4-220ENST00000488017 PDGFAP04085 211 aa7.65□□□□□ -1.18
SMC4-220ENST00000488017 ZAR1Q86SH2 424 aa7.65□□□□□ -1.18
SMC4-220ENST00000488017 GGNBP2Q9H3C7 697 aa7.65□□□□□ -1.18
SMC4-220ENST00000488017 CARMIL2Q6F5E8 1435 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 MZF1P28698 734 aaPredicted RBP7.64□□□□□ -1.19
SMC4-220ENST00000488017 DNM1Q05193 864 aaKnown RBP7.64□□□□□ -1.19
SMC4-220ENST00000488017 SOX4Q06945 474 aaPredicted RBP7.64□□□□□ -1.19
SMC4-220ENST00000488017 CDPF1Q6NVV7 123 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 SHISA5Q8N114 240 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 C2CD4AQ8NCU7 369 aaPredicted RBP7.64□□□□□ -1.19
SMC4-220ENST00000488017 FLCNQ8NFG4 579 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 HELQQ8TDG4 1101 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 FBLIM1Q8WUP2 373 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 TBC1D32Q96NH3 1257 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 ZKSCAN3Q9BRR0 538 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms