RNA–Protein interactions for RNA: ENST00000487615.5

TRA2B-214, Transcript of transformer 2 beta homolog, humanhuman

TSL 1 (best)

Gene TRA2B, Length 4,485 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-214ENST00000487615 GTF3C6Q969F1 213 aa13.66□□□□□ -0.22
TRA2B-214ENST00000487615 MBD4O95243 580 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 HMGB2P26583 209 aaKnown RBP13.65□□□□□ -0.22
TRA2B-214ENST00000487615 RFC4P35249 363 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 GPT2Q8TD30 523 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 LPIN2Q92539 896 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 AK7Q96M32 723 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 RRAGDQ9NQL2 400 aaPredicted RBP13.65□□□□□ -0.22
TRA2B-214ENST00000487615 E7EWF7 191 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 LDHCP07864 332 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 CCDC87Q9NVE4 849 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 MIGA1Q8NAN2 632 aa13.65□□□□□ -0.22
TRA2B-214ENST00000487615 ZNF830Q96NB3 372 aaPredicted RBP13.65□□□□□ -0.22
TRA2B-214ENST00000487615 NLRP5P59047 1200 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 KIF5BP33176 963 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 LEO1Q8WVC0 666 aaPredicted RBP13.64□□□□□ -0.23
TRA2B-214ENST00000487615 LMTK3Q96Q04 1460 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 MAGEB6P1A0A0J9YX57 407 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 BAG3O95817 575 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 CTSWP56202 376 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 VSIG10Q8N0Z9 540 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 NYXQ9GZU5 481 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 TTC12Q9H892 705 aaPredicted RBP13.64□□□□□ -0.23
TRA2B-214ENST00000487615 ASAP1Q9ULH1 1129 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 ANGEL1Q9UNK9 670 aaKnown RBP13.64□□□□□ -0.23
TRA2B-214ENST00000487615 MARCKSP29966 332 aaPredicted RBP13.64□□□□□ -0.23
TRA2B-214ENST00000487615 GSDMDP57764 484 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 PTPN14Q15678 1187 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 BRINP3Q76B58 766 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 TMEM87BQ96K49 555 aa13.64□□□□□ -0.23
TRA2B-214ENST00000487615 MAP3K15Q6ZN16 1313 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 B4E1Z4 1266 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 CIAO1O76071 339 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 HSPD1P10809 573 aaKnown RBP13.63□□□□□ -0.23
TRA2B-214ENST00000487615 RXRAP19793 462 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 IFIT1BQ5T764 474 aaKnown RBP13.63□□□□□ -0.23
TRA2B-214ENST00000487615 ZNF589Q86UQ0 364 aaPredicted RBP13.63□□□□□ -0.23
TRA2B-214ENST00000487615 C8orf37Q96NL8 207 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 KIF2AO00139 706 aaPredicted RBP13.63□□□□□ -0.23
TRA2B-214ENST00000487615 CEP170BQ9Y4F5 1589 aaPredicted RBP13.63□□□□□ -0.23
TRA2B-214ENST00000487615 MROH5Q6ZUA9 1318 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 CCDC70Q6NSX1 233 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 TPTE2Q6XPS3 522 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 GIGYF2Q6Y7W6 1299 aaKnown RBP13.63□□□□□ -0.23
TRA2B-214ENST00000487615 GOLGA6L1Q8N7Z2 621 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 C1orf167Q5SNV9 1468 aa13.63□□□□□ -0.23
TRA2B-214ENST00000487615 RRP9O43818 475 aaKnown RBP13.62□□□□□ -0.23
TRA2B-214ENST00000487615 EPHA10Q5JZY3 1008 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 KLHL10Q6JEL2 608 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 PUS3Q9BZE2 481 aaKnown RBP13.62□□□□□ -0.23
TRA2B-214ENST00000487615 CEMIPQ8WUJ3 1361 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 PXDNLA1KZ92 1463 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 GPS2Q13227 327 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 ISM2Q6H9L7 571 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 CCDC186Q7Z3E2 898 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 SLF2Q8IX21 1173 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 A0A0U1RQG5 324 aaPredicted RBP13.62□□□□□ -0.23
TRA2B-214ENST00000487615 CCDC194A0A1B0GVG4 234 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 TOP1P11387 765 aaKnown RBP13.62□□□□□ -0.23
TRA2B-214ENST00000487615 NECTIN1Q15223 517 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 SAMD1Q6SPF0 538 aaPredicted RBP13.62□□□□□ -0.23
TRA2B-214ENST00000487615 KAT14Q9H8E8 782 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 SEC63Q9UGP8 760 aaKnown RBP13.62□□□□□ -0.23
TRA2B-214ENST00000487615 NOLC1Q14978 699 aaKnown RBP eCLIP13.62□□□□□ -0.23
TRA2B-214ENST00000487615 C16orf45Q96MC5 204 aaPredicted RBP13.62□□□□□ -0.23
TRA2B-214ENST00000487615 ATG3Q9NT62 314 aa13.62□□□□□ -0.23
TRA2B-214ENST00000487615 FAM160A1Q05DH4 1040 aa13.61□□□□□ -0.23
TRA2B-214ENST00000487615 KANK3Q6NY19 840 aa13.61□□□□□ -0.23
TRA2B-214ENST00000487615 LUZP1Q86V48 1076 aa13.61□□□□□ -0.23
TRA2B-214ENST00000487615 TNS3Q68CZ2 1445 aa13.61□□□□□ -0.23
TRA2B-214ENST00000487615 CYP21A2P08686 494 aa13.61□□□□□ -0.23
TRA2B-214ENST00000487615 CTDP1Q9Y5B0 961 aaPredicted RBP13.61□□□□□ -0.23
TRA2B-214ENST00000487615 ZNF532Q9HCE3 1301 aa13.61□□□□□ -0.23
TRA2B-214ENST00000487615 C6orf229H3BNL8 230 aa13.61□□□□□ -0.23
TRA2B-214ENST00000487615 TTLL5Q6EMB2 1281 aa13.61□□□□□ -0.23
TRA2B-214ENST00000487615 UBAP1LF5GYI3 381 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 H7C1W4 665 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 TNNT1P13805 278 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 ZMYM1Q5SVZ6 1142 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 TMC6Q7Z403 805 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 CLSTN2Q9H4D0 955 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 RTCBQ9Y3I0 505 aaKnown RBP13.6□□□□□ -0.23
TRA2B-214ENST00000487615 RBM5P52756 815 aaKnown RBP eCLIP13.6□□□□□ -0.23
TRA2B-214ENST00000487615 FAM177A1Q8N128 213 aaPredicted RBP13.6□□□□□ -0.23
TRA2B-214ENST00000487615 AOPEPQ8N6M6 819 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 SPATA5Q8NB90 893 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 ZNF274Q96GC6 653 aaPredicted RBP13.6□□□□□ -0.23
TRA2B-214ENST00000487615 ARMT1Q9H993 441 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 TCEAL9Q9UHQ7 104 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 BMP15O95972 392 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 ZSCAN29Q8IWY8 852 aaPredicted RBP13.6□□□□□ -0.23
TRA2B-214ENST00000487615 RTL9Q8NET4 1388 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 PFKFB2O60825 505 aa13.6□□□□□ -0.23
TRA2B-214ENST00000487615 GSTO1P78417 241 aa13.59□□□□□ -0.23
TRA2B-214ENST00000487615 KIF18AQ8NI77 898 aa13.59□□□□□ -0.23
TRA2B-214ENST00000487615 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.59□□□□□ -0.23
TRA2B-214ENST00000487615 SLC4A8Q2Y0W8 1093 aa13.59□□□□□ -0.23
TRA2B-214ENST00000487615 PPP1R9BQ96SB3 815 aa13.59□□□□□ -0.23
TRA2B-214ENST00000487615 GREM2Q9H772 168 aa13.59□□□□□ -0.23
TRA2B-214ENST00000487615 ZNHIT6Q9NWK9 470 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms