RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 TFCP2L1Q9NZI6 479 aa15.36■□□□□ 0.05
HMGN1-216ENST00000486741 CTSWP56202 376 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 CTDSPL2Q05D32 466 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 PUM3Q15397 648 aaKnown RBP15.35■□□□□ 0.05
HMGN1-216ENST00000486741 ANKRD20A12PQ8NF67 263 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 CLIP2Q9UDT6 1046 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 MTMR6Q9Y217 621 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 A0A1B0GVL5 298 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 CATIPQ7Z7H3 387 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 PHKA1P46020 1223 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 TYRO3Q06418 890 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 CNNM3Q8NE01 707 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 PHKBQ93100 1093 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 C1orf167Q5SNV9 1468 aa15.35■□□□□ 0.05
HMGN1-216ENST00000486741 NOL7Q9UMY1 257 aaKnown RBP15.34■□□□□ 0.05
HMGN1-216ENST00000486741 GIGYF2Q6Y7W6 1299 aaKnown RBP15.34■□□□□ 0.05
HMGN1-216ENST00000486741 ZNF444Q8N0Y2 327 aaPredicted RBP15.34■□□□□ 0.05
HMGN1-216ENST00000486741 SEC31BQ9NQW1 1179 aa15.34■□□□□ 0.05
HMGN1-216ENST00000486741 TRMT1Q9NXH9 659 aaKnown RBP15.34■□□□□ 0.05
HMGN1-216ENST00000486741 RTCBQ9Y3I0 505 aaKnown RBP15.34■□□□□ 0.05
HMGN1-216ENST00000486741 FGAP02671 866 aa15.34■□□□□ 0.05
HMGN1-216ENST00000486741 PCCAP05165 728 aaPredicted RBP15.34■□□□□ 0.05
HMGN1-216ENST00000486741 BCAMP50895 628 aa15.34■□□□□ 0.05
HMGN1-216ENST00000486741 RTN1Q16799 776 aa15.34■□□□□ 0.05
HMGN1-216ENST00000486741 MAP3K15Q6ZN16 1313 aa15.33■□□□□ 0.05
HMGN1-216ENST00000486741 SSH2Q76I76 1423 aa15.33■□□□□ 0.05
HMGN1-216ENST00000486741 MAGEB6P1A0A0J9YX57 407 aa15.33■□□□□ 0.05
HMGN1-216ENST00000486741 TPTE2Q6XPS3 522 aa15.33■□□□□ 0.05
HMGN1-216ENST00000486741 WWC3Q9ULE0 1092 aa15.33■□□□□ 0.05
HMGN1-216ENST00000486741 MPHOSPH10O00566 681 aaKnown RBP15.33■□□□□ 0.04
HMGN1-216ENST00000486741 NLRP5P59047 1200 aa15.33■□□□□ 0.04
HMGN1-216ENST00000486741 CCDC47Q96A33 483 aaKnown RBP15.33■□□□□ 0.04
HMGN1-216ENST00000486741 CCDC102BQ68D86 513 aa15.33■□□□□ 0.04
HMGN1-216ENST00000486741 hCG_1642624A0A1W2PR95 340 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 TXLNAP40222 546 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 MTX1Q13505 466 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 CUL4AQ13619 759 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 LPIN2Q92539 896 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 RGS12O14924 1447 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 LOC102724428A0A0B4J2F2 783 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 SIK1P57059 783 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 ZNF445P59923 1031 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 FAM200AQ8TCP9 573 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 C16orf45Q96MC5 204 aaPredicted RBP15.32■□□□□ 0.04
HMGN1-216ENST00000486741 GYG1P46976 350 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 LEO1Q8WVC0 666 aaPredicted RBP15.32■□□□□ 0.04
HMGN1-216ENST00000486741 ESR2Q92731 530 aa15.32■□□□□ 0.04
HMGN1-216ENST00000486741 SPTLC2O15270 562 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 LIG1P18858 919 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 NECTIN1Q15223 517 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 SOGA3Q5TF21 947 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 CCDC186Q7Z3E2 898 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 CMTR1Q8N1G2 835 aaKnown RBP15.31■□□□□ 0.04
HMGN1-216ENST00000486741 SPATA5Q8NB90 893 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 MRPS27Q92552 414 aaKnown RBP15.31■□□□□ 0.04
HMGN1-216ENST00000486741 KRT23Q9C075 422 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 GPHNQ9NQX3 736 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-216ENST00000486741 CCNL1Q9UK58 526 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-216ENST00000486741 CLCN1P35523 988 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 IFIT1BQ5T764 474 aaKnown RBP15.31■□□□□ 0.04
HMGN1-216ENST00000486741 GTF3C6Q969F1 213 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 H7C1W4 665 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 SYKP43405 635 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 OSBP2Q969R2 916 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 ERBB4Q15303 1308 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 CRKLP46109 303 aaKnown RBP15.31■□□□□ 0.04
HMGN1-216ENST00000486741 TTC6Q86TZ1 520 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 NLRP10Q86W26 655 aa15.31■□□□□ 0.04
HMGN1-216ENST00000486741 SSBP05455 408 aaKnown RBP eCLIP15.3■□□□□ 0.04
HMGN1-216ENST00000486741 ADD1P35611 737 aaKnown RBP15.3■□□□□ 0.04
HMGN1-216ENST00000486741 STX1AQ16623 288 aa15.3■□□□□ 0.04
HMGN1-216ENST00000486741 MCM9Q9NXL9 1143 aa15.3■□□□□ 0.04
HMGN1-216ENST00000486741 C17orf53Q8N3J3 647 aaPredicted RBP15.3■□□□□ 0.04
HMGN1-216ENST00000486741 ZDHHC9Q9Y397 364 aa15.3■□□□□ 0.04
HMGN1-216ENST00000486741 TNNT3P45378 269 aaPredicted RBP15.3■□□□□ 0.04
HMGN1-216ENST00000486741 SMIM5Q71RC9 77 aa15.3■□□□□ 0.04
HMGN1-216ENST00000486741 CRNKL1Q9BZJ0 848 aaKnown RBP15.3■□□□□ 0.04
HMGN1-216ENST00000486741 MAST3O60307 1309 aa15.3■□□□□ 0.04
HMGN1-216ENST00000486741 CTAGE5O15320 804 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 PDE4CQ08493 712 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 AOPEPQ8N6M6 819 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 ZHX3Q9H4I2 956 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 ATG3Q9NT62 314 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 ANGEL1Q9UNK9 670 aaKnown RBP15.29■□□□□ 0.04
HMGN1-216ENST00000486741 M0R2C6 588 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 TPM2P07951 284 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 PDIA6Q15084 440 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 PARP10Q53GL7 1025 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 SPECC1Q5M775 1068 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 CDK5RAP3Q96JB5 506 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 DSCC1Q9BVC3 393 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 PDE8BO95263 885 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 PDE6AP16499 860 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 SCRN1Q12765 414 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 PUS7LQ9H0K6 701 aaKnown RBP15.29■□□□□ 0.04
HMGN1-216ENST00000486741 CEMIPQ8WUJ3 1361 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 SDR42E1Q8WUS8 393 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 FTOQ9C0B1 505 aaKnown RBP eCLIP15.29■□□□□ 0.047e-6■■□□□ 12.9
HMGN1-216ENST00000486741 CNNM2Q9H8M5 875 aa15.29■□□□□ 0.04
HMGN1-216ENST00000486741 EPB41L2O43491 1005 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms