RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	OTOP1	Q7RTM1	612 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	USP17L1	Q7RTZ2	530 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	TTLL11	Q8NHH1	800 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	FBXW7	Q969H0	707 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	GREM2	Q9H772	168 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	FZD1	Q9UP38	647 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	IL16	Q14005	1332 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	FANCI	Q9NVI1	1328 aa		13.52	□□□□□ -0.25
HMGN1-215	ENST00000485550	VAMP4	O75379	141 aa		13.51	□□□□□ -0.25
HMGN1-215	ENST00000485550	UBE3B	Q7Z3V4	1068 aa		13.51	□□□□□ -0.25
HMGN1-215	ENST00000485550	CDC5L	Q99459	802 aa	Known RBP	13.51	□□□□□ -0.25
HMGN1-215	ENST00000485550	CFHR5	Q9BXR6	569 aa		13.51	□□□□□ -0.25
HMGN1-215	ENST00000485550	BRCA2	P51587	3418 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	XDH	P47989	1333 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550		H7C1W4	665 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	WNT10B	O00744	389 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	SASH1	O94885	1247 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	ATP2B4	P23634	1241 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	ARMC9	Q7Z3E5	817 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	WDR63	Q8IWG1	891 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	DNAAF4	Q8WXU2	420 aa		13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	ANGEL1	Q9UNK9	670 aa	Known RBP	13.5	□□□□□ -0.25
HMGN1-215	ENST00000485550	CD44	P16070	742 aa	Known RBP	13.49	□□□□□ -0.25
HMGN1-215	ENST00000485550	EN2	P19622	333 aa	Predicted RBP	13.49	□□□□□ -0.25
HMGN1-215	ENST00000485550	GCKR	Q14397	625 aa		13.49	□□□□□ -0.25
HMGN1-215	ENST00000485550	SPRYD7	Q5W111	196 aa		13.49	□□□□□ -0.25
HMGN1-215	ENST00000485550	INTS3	Q68E01	1043 aa	Known RBP	13.49	□□□□□ -0.25
HMGN1-215	ENST00000485550	PODN	Q7Z5L7	613 aa		13.49	□□□□□ -0.25
HMGN1-215	ENST00000485550	BSDC1	Q9NW68	430 aa	Predicted RBP	13.49	□□□□□ -0.25
HMGN1-215	ENST00000485550	MINPP1	Q9UNW1	487 aa		13.49	□□□□□ -0.25
HMGN1-215	ENST00000485550		F6X3S4	739 aa		13.48	□□□□□ -0.25
HMGN1-215	ENST00000485550	ALDH1A1	P00352	501 aa		13.48	□□□□□ -0.25
HMGN1-215	ENST00000485550	IFNL1	Q8IU54	200 aa		13.48	□□□□□ -0.25
HMGN1-215	ENST00000485550	OGFOD1	Q8N543	542 aa		13.48	□□□□□ -0.25
HMGN1-215	ENST00000485550	CD99L2	Q8TCZ2	262 aa		13.48	□□□□□ -0.25
HMGN1-215	ENST00000485550	OTOF	Q9HC10	1997 aa		13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	ITGA6	P23229	1130 aa		13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	IGHMBP2	P38935	993 aa	Known RBP	13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	CCT4	P50991	539 aa	Known RBP	13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	DACT2	Q5SW24	774 aa		13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	LDLRAD1	Q5T700	205 aa		13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	LINS1	Q8NG48	757 aa		13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	MYH16	Q9H6N6	1097 aa		13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	PTPN22	Q9Y2R2	807 aa		13.47	□□□□□ -0.25
HMGN1-215	ENST00000485550	MANSC4	A6NHS7	340 aa	Predicted RBP	13.46	□□□□□ -0.25
HMGN1-215	ENST00000485550	CASP7	P55210	303 aa		13.46	□□□□□ -0.25
HMGN1-215	ENST00000485550	SLC10A4	Q96EP9	437 aa		13.46	□□□□□ -0.25
HMGN1-215	ENST00000485550	CLMN	Q96JQ2	1002 aa		13.46	□□□□□ -0.25
HMGN1-215	ENST00000485550	COLQ	Q9Y215	455 aa	Predicted RBP	13.46	□□□□□ -0.25
HMGN1-215	ENST00000485550	ZSWIM8	A7E2V4	1837 aa		13.46	□□□□□ -0.26
HMGN1-215	ENST00000485550	MED23	Q9ULK4	1368 aa		13.45	□□□□□ -0.26
HMGN1-215	ENST00000485550	CSF1R	P07333	972 aa		13.45	□□□□□ -0.26
HMGN1-215	ENST00000485550	TXNRD3	Q86VQ6	643 aa		13.45	□□□□□ -0.26
HMGN1-215	ENST00000485550	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.45	□□□□□ -0.26
HMGN1-215	ENST00000485550	KIAA0825	Q8IV33	1275 aa		13.45	□□□□□ -0.26
HMGN1-215	ENST00000485550	ERO1A	Q96HE7	468 aa		13.45	□□□□□ -0.26
HMGN1-215	ENST00000485550	MPHOSPH8	Q99549	860 aa		13.45	□□□□□ -0.26
HMGN1-215	ENST00000485550	PLA2G12B	Q9BX93	195 aa		13.45	□□□□□ -0.26
HMGN1-215	ENST00000485550	MYO3B	Q8WXR4	1341 aa		13.44	□□□□□ -0.26
HMGN1-215	ENST00000485550	KLRK1	P26718	216 aa		13.44	□□□□□ -0.26
HMGN1-215	ENST00000485550	INHBE	P58166	350 aa		13.44	□□□□□ -0.26
HMGN1-215	ENST00000485550	CAP1	Q01518	475 aa		13.44	□□□□□ -0.26
HMGN1-215	ENST00000485550	WNK4	Q96J92	1243 aa		13.44	□□□□□ -0.26
HMGN1-215	ENST00000485550	EFCC1	Q9HA90	598 aa		13.44	□□□□□ -0.26
HMGN1-215	ENST00000485550	CHMP3	Q9Y3E7	222 aa		13.44	□□□□□ -0.26
HMGN1-215	ENST00000485550	SZT2	Q5T011	3432 aa		13.44	□□□□□ -0.26
HMGN1-215	ENST00000485550	SSC5D	A1L4H1	1573 aa		13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	ANKRD18B	A2A2Z9	1011 aa		13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	SNAP23	O00161	211 aa		13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	CRHR2	Q13324	411 aa		13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	BEND3	Q5T5X7	828 aa		13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	STRIP1	Q5VSL9	837 aa		13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	HELB	Q8NG08	1087 aa	Predicted RBP	13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	ARMC5	Q96C12	935 aa		13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	LEMD3	Q9Y2U8	911 aa		13.43	□□□□□ -0.26
HMGN1-215	ENST00000485550	ZNF804B	A4D1E1	1349 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	TAF5L	O75529	589 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	ZBTB48	P10074	688 aa	Predicted RBP	13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	KCNJ4	P48050	445 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	FOXO4	P98177	505 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	CHRND	Q07001	517 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	TTLL5	Q6EMB2	1281 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	SLC4A10	Q6U841	1118 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	TMEM106C	Q9BVX2	250 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	ANKRD2	Q9GZV1	360 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	COA1	Q9GZY4	146 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550	DEFB129	Q9H1M3	183 aa		13.42	□□□□□ -0.26
HMGN1-215	ENST00000485550		A0A1B0GUL6	1792 aa		13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	MYC	P01106	439 aa	Predicted RBP	13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	GJA5	P36382	358 aa		13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	SP3	Q02447	781 aa		13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	IFIT5	Q13325	482 aa	Known RBP	13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	MAP3K11	Q16584	847 aa		13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	EPHA10	Q5JZY3	1008 aa		13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	LMBR1L	Q6UX01	489 aa		13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	ZBED3	Q96IU2	234 aa	Predicted RBP	13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	ZNF594	Q96JF6	807 aa	Predicted RBP	13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	PCDHAC2	Q9Y5I4	1007 aa		13.41	□□□□□ -0.26
HMGN1-215	ENST00000485550	COL1A1	P02452	1464 aa	Predicted RBP	13.41	□□□□□ -0.26

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