RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 RGS9O75916 674 aaPredicted RBP11.87□□□□□ -0.51
MCF2-207ENST00000483690 NFX1Q12986 1120 aaKnown RBP11.87□□□□□ -0.51
MCF2-207ENST00000483690 SF3A1Q15459 793 aaKnown RBP11.87□□□□□ -0.51
MCF2-207ENST00000483690 IRF7Q92985 503 aa11.87□□□□□ -0.51
MCF2-207ENST00000483690 NECAB3Q96P71 396 aaPredicted RBP11.87□□□□□ -0.51
MCF2-207ENST00000483690 TRIM56Q9BRZ2 755 aaKnown RBP11.87□□□□□ -0.51
MCF2-207ENST00000483690 ERBB4Q15303 1308 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 CELA3AP09093 270 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 TNNI2P48788 182 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 FAAP100Q0VG06 881 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 MAP3K11Q16584 847 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 GDF6Q6KF10 455 aaPredicted RBP11.86□□□□□ -0.51
MCF2-207ENST00000483690 TTC9Q92623 222 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 DRC1Q96MC2 740 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 ADAM19Q9H013 955 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 SOX13Q9UN79 622 aa11.86□□□□□ -0.51
MCF2-207ENST00000483690 ENC1O14682 589 aa11.85□□□□□ -0.51
MCF2-207ENST00000483690 GBP2P32456 591 aaPredicted RBP11.85□□□□□ -0.51
MCF2-207ENST00000483690 PCDH1Q08174 1060 aa11.85□□□□□ -0.51
MCF2-207ENST00000483690 CACTIN-AS1Q8N1I8 211 aa11.85□□□□□ -0.51
MCF2-207ENST00000483690 SLC43A3Q8NBI5 491 aa11.85□□□□□ -0.51
MCF2-207ENST00000483690 NUDT8Q8WV74 236 aa11.85□□□□□ -0.51
MCF2-207ENST00000483690 TMEM39AQ9NV64 488 aa11.85□□□□□ -0.51
MCF2-207ENST00000483690 F6X3S4 739 aa11.84□□□□□ -0.51
MCF2-207ENST00000483690 EPXP11678 715 aa11.84□□□□□ -0.51
MCF2-207ENST00000483690 CABP4P57796 275 aa11.84□□□□□ -0.51
MCF2-207ENST00000483690 PPP2R3AQ06190 1150 aa11.84□□□□□ -0.51
MCF2-207ENST00000483690 ADAMTSL4Q6UY14 1074 aa11.84□□□□□ -0.51
MCF2-207ENST00000483690 TMEM74Q96NL1 305 aa11.84□□□□□ -0.51
MCF2-207ENST00000483690 MINDY4BA8MYZ0 360 aa11.83□□□□□ -0.52
MCF2-207ENST00000483690 ADAMTS2O95450 1211 aa11.83□□□□□ -0.52
MCF2-207ENST00000483690 CDC27P30260 824 aa11.83□□□□□ -0.52
MCF2-207ENST00000483690 LIG3P49916 1009 aa11.83□□□□□ -0.52
MCF2-207ENST00000483690 ZNF157P51786 506 aaPredicted RBP11.83□□□□□ -0.52
MCF2-207ENST00000483690 VN1R5Q7Z5H4 357 aa11.83□□□□□ -0.52
MCF2-207ENST00000483690 ACDQ96AP0 544 aa11.83□□□□□ -0.52
MCF2-207ENST00000483690 JPH1Q9HDC5 661 aaPredicted RBP11.83□□□□□ -0.52
MCF2-207ENST00000483690 SH2B1Q9NRF2 756 aaPredicted RBP11.83□□□□□ -0.52
MCF2-207ENST00000483690 B3GALT4O96024 378 aa11.82□□□□□ -0.52
MCF2-207ENST00000483690 KRT76Q01546 638 aa11.82□□□□□ -0.52
MCF2-207ENST00000483690 SAMM50Q9Y512 469 aa11.82□□□□□ -0.52
MCF2-207ENST00000483690 TTBK2Q6IQ55 1244 aa11.81□□□□□ -0.52
MCF2-207ENST00000483690 KANK3Q6NY19 840 aa11.81□□□□□ -0.52
MCF2-207ENST00000483690 KIAA0825Q8IV33 1275 aa11.81□□□□□ -0.52
MCF2-207ENST00000483690 PHC3Q8NDX5 983 aa11.81□□□□□ -0.52
MCF2-207ENST00000483690 SPON2Q9BUD6 331 aa11.81□□□□□ -0.52
MCF2-207ENST00000483690 STARD13Q9Y3M8 1113 aa11.81□□□□□ -0.52
MCF2-207ENST00000483690 EIF4A3P38919 411 aaKnown RBP11.8□□□□□ -0.52
MCF2-207ENST00000483690 IKBKEQ14164 716 aa11.8□□□□□ -0.52
MCF2-207ENST00000483690 ZNF423Q2M1K9 1284 aa11.8□□□□□ -0.52
MCF2-207ENST00000483690 DDX54Q8TDD1 881 aaKnown RBP11.8□□□□□ -0.52
MCF2-207ENST00000483690 TANGO6Q9C0B7 1094 aa11.8□□□□□ -0.52
MCF2-207ENST00000483690 PPP1R1BQ9UD71 204 aaPredicted RBP11.8□□□□□ -0.52
MCF2-207ENST00000483690 PAGE1O75459 146 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 ESRRAP11474 423 aaPredicted RBP11.79□□□□□ -0.52
MCF2-207ENST00000483690 EPHA1P21709 976 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 PAK2Q13177 524 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 PCNX4Q63HM2 1172 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 VPS37DQ86XT2 251 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 IL22RA1Q8N6P7 574 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 GALNT6Q8NCL4 622 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 EDARADDQ8WWZ3 215 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 RHOVQ96L33 236 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 ADAMTS1Q9UHI8 967 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 TLR6Q9Y2C9 796 aa11.79□□□□□ -0.52
MCF2-207ENST00000483690 LILRB5O75023 590 aa11.78□□□□□ -0.52
MCF2-207ENST00000483690 ALBP02768 609 aa11.78□□□□□ -0.52
MCF2-207ENST00000483690 LMNB1P20700 586 aa11.78□□□□□ -0.52
MCF2-207ENST00000483690 GJA8P48165 433 aa11.78□□□□□ -0.52
MCF2-207ENST00000483690 RPS26P62854 115 aaKnown RBP11.78□□□□□ -0.52
MCF2-207ENST00000483690 AGMOQ6ZNB7 445 aa11.78□□□□□ -0.52
MCF2-207ENST00000483690 C20orf204Q6ZNR8 217 aa11.78□□□□□ -0.52
MCF2-207ENST00000483690 C1orf229Q6ZS94 237 aaPredicted RBP11.78□□□□□ -0.52
MCF2-207ENST00000483690 GPRASP2Q96D09 838 aa11.78□□□□□ -0.52
MCF2-207ENST00000483690 H3BRJ5 948 aa11.77□□□□□ -0.53
MCF2-207ENST00000483690 NME2P22392 152 aa11.77□□□□□ -0.53
MCF2-207ENST00000483690 DNAJA1P31689 397 aaKnown RBP11.77□□□□□ -0.53
MCF2-207ENST00000483690 ARID5AQ03989 594 aa11.77□□□□□ -0.53
MCF2-207ENST00000483690 GRIK5Q16478 980 aa11.77□□□□□ -0.53
MCF2-207ENST00000483690 CHSY3Q70JA7 882 aa11.77□□□□□ -0.53
MCF2-207ENST00000483690 ZNF775Q96BV0 537 aaPredicted RBP11.77□□□□□ -0.53
MCF2-207ENST00000483690 PRKAG2Q9UGJ0 569 aa11.77□□□□□ -0.53
MCF2-207ENST00000483690 PPME1Q9Y570 386 aa11.77□□□□□ -0.53
MCF2-207ENST00000483690 M0R082 166 aa11.76□□□□□ -0.53
MCF2-207ENST00000483690 PF4P02776 101 aa11.76□□□□□ -0.53
MCF2-207ENST00000483690 CDC25BP30305 580 aa11.76□□□□□ -0.53
MCF2-207ENST00000483690 AFF1P51825 1210 aaKnown RBP11.76□□□□□ -0.53
MCF2-207ENST00000483690 SULF2Q8IWU5 870 aa11.76□□□□□ -0.53
MCF2-207ENST00000483690 ZNF417Q8TAU3 575 aa11.76□□□□□ -0.53
MCF2-207ENST00000483690 ZNF296Q8WUU4 475 aaPredicted RBP11.76□□□□□ -0.53
MCF2-207ENST00000483690 ZNF587Q96SQ5 575 aaPredicted RBP11.76□□□□□ -0.53
MCF2-207ENST00000483690 OIP5O43482 229 aa11.75□□□□□ -0.53
MCF2-207ENST00000483690 LMNB2Q03252 620 aa11.75□□□□□ -0.53
MCF2-207ENST00000483690 FAM160A1Q05DH4 1040 aa11.75□□□□□ -0.53
MCF2-207ENST00000483690 CAMK2GQ13555 558 aaPredicted RBP11.75□□□□□ -0.53
MCF2-207ENST00000483690 SNAP47Q5SQN1 464 aa11.75□□□□□ -0.53
MCF2-207ENST00000483690 FAM117BQ6P1L5 589 aa11.75□□□□□ -0.53
MCF2-207ENST00000483690 UBXN4Q92575 508 aa11.75□□□□□ -0.53
MCF2-207ENST00000483690 GMLQ99445 158 aa11.75□□□□□ -0.53
MCF2-207ENST00000483690 SUPT16HQ9Y5B9 1047 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms