RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 DPCR1Q3MIW9 517 aa15.43■□□□□ 0.06
USP40-214ENST00000483519 MNS1Q8NEH6 495 aa15.43■□□□□ 0.06
USP40-214ENST00000483519 LRRC2Q9BYS8 371 aa15.43■□□□□ 0.06
USP40-214ENST00000483519 ZRANB2O95218 330 aaKnown RBP eCLIP15.42■□□□□ 0.06
USP40-214ENST00000483519 CTDNEP1O95476 244 aa15.42■□□□□ 0.06
USP40-214ENST00000483519 PROSER3Q2NL68 480 aa15.42■□□□□ 0.06
USP40-214ENST00000483519 ERCC4Q92889 916 aaPredicted RBP15.42■□□□□ 0.06
USP40-214ENST00000483519 EDC3Q96F86 508 aaKnown RBP15.42■□□□□ 0.06
USP40-214ENST00000483519 RTEL1Q9NZ71 1219 aa15.42■□□□□ 0.06
USP40-214ENST00000483519 ORC3Q9UBD5 711 aaPredicted RBP15.42■□□□□ 0.06
USP40-214ENST00000483519 PCDHA7Q9UN72 937 aa15.42■□□□□ 0.06
USP40-214ENST00000483519 ATP8B1O43520 1251 aa15.42■□□□□ 0.06
USP40-214ENST00000483519 PLA2G4AP47712 749 aa15.42■□□□□ 0.06
USP40-214ENST00000483519 LRRN4CLQ8ND94 238 aa15.42■□□□□ 0.06
USP40-214ENST00000483519 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.42■□□□□ 0.06
USP40-214ENST00000483519 SALL1Q9NSC2 1324 aa15.42■□□□□ 0.06
USP40-214ENST00000483519 IP6K1Q92551 441 aa15.41■□□□□ 0.06
USP40-214ENST00000483519 DNAI1Q9UI46 699 aa15.41■□□□□ 0.06
USP40-214ENST00000483519 NUTM2BA6NNL0 878 aaPredicted RBP15.41■□□□□ 0.06
USP40-214ENST00000483519 NUTM2EB1AL46 878 aaPredicted RBP15.41■□□□□ 0.06
USP40-214ENST00000483519 APOBRQ0VD83 1088 aa15.41■□□□□ 0.06
USP40-214ENST00000483519 SF3A1Q15459 793 aaKnown RBP15.41■□□□□ 0.06
USP40-214ENST00000483519 ZNF530Q6P9A1 599 aaPredicted RBP15.41■□□□□ 0.06
USP40-214ENST00000483519 NUTM2AQ8IVF1 878 aaPredicted RBP15.41■□□□□ 0.06
USP40-214ENST00000483519 KCNG4Q8TDN1 519 aa15.41■□□□□ 0.06
USP40-214ENST00000483519 A0A1B0GVL5 298 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 NDUFA8P51970 172 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 GORABQ5T7V8 394 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 CCDC129Q6ZRS4 1044 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 LAMA4Q16363 1823 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 EFCAB8A8MWE9 144 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 SLC3A2P08195 630 aaKnown RBP15.4■□□□□ 0.06
USP40-214ENST00000483519 NLRP12P59046 1061 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 TXLNBQ8N3L3 684 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 AGXT2Q9BYV1 514 aa15.4■□□□□ 0.06
USP40-214ENST00000483519 GCP02774 474 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 CCT2P78371 535 aaKnown RBP15.39■□□□□ 0.05
USP40-214ENST00000483519 STK38Q15208 465 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 STOX1Q6ZVD7 989 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 SYTL4Q96C24 671 aaPredicted RBP15.39■□□□□ 0.05
USP40-214ENST00000483519 DBNLQ9UJU6 430 aaKnown RBP15.39■□□□□ 0.05
USP40-214ENST00000483519 CARMIL3Q8ND23 1372 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 SH3TC1Q8TE82 1336 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 HNRNPH2P55795 449 aaKnown RBP15.39■□□□□ 0.05
USP40-214ENST00000483519 LRRFIP1Q32MZ4 808 aaKnown RBP15.39■□□□□ 0.05
USP40-214ENST00000483519 PLEKHO1Q53GL0 409 aaPredicted RBP15.39■□□□□ 0.05
USP40-214ENST00000483519 TNNI3KQ59H18 835 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 CCDC158Q5M9N0 1113 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 MEX3CQ5U5Q3 659 aaKnown RBP15.39■□□□□ 0.05
USP40-214ENST00000483519 KLHDC4Q8TBB5 520 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 CABLES1Q8TDN4 633 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 FPGT-TNNI3KV9GXZ4 949 aa15.39■□□□□ 0.05
USP40-214ENST00000483519 HEG1Q9ULI3 1381 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 IKBKBO14920 756 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 CBFA2T2O43439 604 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 TADA3O75528 432 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 YEATS4O95619 227 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 GUCY1B3Q02153 619 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 NEXNQ0ZGT2 675 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 NBPF6Q5VWK0 638 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 MPRIPQ6WCQ1 1025 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 LINC00301Q8NCQ3 95 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 ZNF274Q96GC6 653 aaPredicted RBP15.38■□□□□ 0.05
USP40-214ENST00000483519 NBPF4Q96M43 638 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 NAP1L2Q9ULW6 460 aaPredicted RBP15.38■□□□□ 0.05
USP40-214ENST00000483519 FCHSD1Q86WN1 690 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 FMNL2Q96PY5 1086 aa15.38■□□□□ 0.05
USP40-214ENST00000483519 SEC62Q99442 399 aaKnown RBP15.38■□□□□ 0.05
USP40-214ENST00000483519 DDX21Q9NR30 783 aaKnown RBP eCLIP15.38■□□□□ 0.05
USP40-214ENST00000483519 RNMTO43148 476 aaKnown RBP15.37■□□□□ 0.05
USP40-214ENST00000483519 URI1O94763 535 aaPredicted RBP15.37■□□□□ 0.05
USP40-214ENST00000483519 FANCCQ00597 558 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 EXOSC10Q01780 885 aaKnown RBP15.37■□□□□ 0.05
USP40-214ENST00000483519 GPS2Q13227 327 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 C1orf141Q5JVX7 400 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 HAUS7Q99871 368 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 COPRSQ9NQ92 184 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 ZSCAN12O43309 604 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 NCAPHQ15003 741 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 AMOTQ4VCS5 1084 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 RIC3Q7Z5B4 369 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 DSCC1Q9BVC3 393 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 NCOA5Q9HCD5 579 aaKnown RBP15.37■□□□□ 0.05
USP40-214ENST00000483519 POLR3EQ9NVU0 708 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 AIMP1Q12904 312 aaKnown RBP15.37■□□□□ 0.05
USP40-214ENST00000483519 ABCA3Q99758 1704 aa15.37■□□□□ 0.05
USP40-214ENST00000483519 NEDD4P46934 1319 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 SPTLC2O15270 562 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 IGKV5-2P06315 115 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 PDIA3P30101 505 aaKnown RBP15.36■□□□□ 0.05
USP40-214ENST00000483519 TRIM65Q6PJ69 517 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 KBTBD3Q8NAB2 608 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 CPDO75976 1380 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 BIN1O00499 593 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 POLR3GO15318 223 aaPredicted RBP15.36■□□□□ 0.05
USP40-214ENST00000483519 ZNF202O95125 648 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 CAPN2P17655 700 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 LMOD1P29536 600 aaPredicted RBP15.36■□□□□ 0.05
USP40-214ENST00000483519 MUM1L1Q5H9M0 696 aa15.36■□□□□ 0.05
USP40-214ENST00000483519 CARD6Q9BX69 1037 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms