RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CAVIN4Q5BKX8 364 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 VPS37DQ86XT2 251 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 KIAA0825Q8IV33 1275 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 CRBNQ96SW2 442 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 EXOC6BQ9Y2D4 811 aa12.01□□□□□ -0.49
HDAC3-208ENST00000476739 NOP58Q9Y2X3 529 aaKnown RBP12.01□□□□□ -0.49
HDAC3-208ENST00000476739 ASTN2O75129 1339 aaPredicted RBP12.01□□□□□ -0.49
HDAC3-208ENST00000476739 COL1A1P02452 1464 aaPredicted RBP12.01□□□□□ -0.49
HDAC3-208ENST00000476739 F8W031 263 aaPredicted RBP12□□□□□ -0.49
HDAC3-208ENST00000476739 ITGBL1O95965 494 aaPredicted RBP12□□□□□ -0.49
HDAC3-208ENST00000476739 PHKA1P46020 1223 aa12□□□□□ -0.49
HDAC3-208ENST00000476739 FMR1Q06787 632 aaKnown RBP eCLIP12□□□□□ -0.49
HDAC3-208ENST00000476739 CHAF1AQ13111 956 aaPredicted RBP12□□□□□ -0.49
HDAC3-208ENST00000476739 KIF4BQ2VIQ3 1234 aa12□□□□□ -0.49
HDAC3-208ENST00000476739 DLK2Q6UY11 383 aa12□□□□□ -0.49
HDAC3-208ENST00000476739 RPAP2Q8IXW5 612 aaPredicted RBP12□□□□□ -0.49
HDAC3-208ENST00000476739 XAGE2Q96GT9 111 aa12□□□□□ -0.49
HDAC3-208ENST00000476739 PCDHAC2Q9Y5I4 1007 aa12□□□□□ -0.49
HDAC3-208ENST00000476739 FAM205AQ6ZU69 1335 aa12□□□□□ -0.49
HDAC3-208ENST00000476739 HSPA6P17066 643 aa11.99□□□□□ -0.49
HDAC3-208ENST00000476739 HTRA3P83110 453 aa11.99□□□□□ -0.49
HDAC3-208ENST00000476739 OS9Q13438 667 aaPredicted RBP11.99□□□□□ -0.49
HDAC3-208ENST00000476739 MFSD14BQ5SR56 506 aa11.99□□□□□ -0.49
HDAC3-208ENST00000476739 CCDC102BQ68D86 513 aa11.99□□□□□ -0.49
HDAC3-208ENST00000476739 CNTROBQ8N137 903 aa11.99□□□□□ -0.49
HDAC3-208ENST00000476739 NEUROD6Q96NK8 337 aa11.99□□□□□ -0.49
HDAC3-208ENST00000476739 MYOZ2Q9NPC6 264 aa11.99□□□□□ -0.49
HDAC3-208ENST00000476739 SUPT16HQ9Y5B9 1047 aaKnown RBP11.99□□□□□ -0.49
HDAC3-208ENST00000476739 MYO3BQ8WXR4 1341 aa11.99□□□□□ -0.49
HDAC3-208ENST00000476739 POLR2AP24928 1970 aaKnown RBP11.99□□□□□ -0.49
HDAC3-208ENST00000476739 MYH13Q9UKX3 1938 aa11.98□□□□□ -0.49
HDAC3-208ENST00000476739 PASKQ96RG2 1323 aa11.98□□□□□ -0.49
HDAC3-208ENST00000476739 FKBP1AP62942 108 aaKnown RBP11.98□□□□□ -0.49
HDAC3-208ENST00000476739 TNNI3KQ59H18 835 aa11.98□□□□□ -0.49
HDAC3-208ENST00000476739 CHMP4BQ9H444 224 aaKnown RBP11.98□□□□□ -0.49
HDAC3-208ENST00000476739 PGAP2Q9UHJ9 254 aa11.98□□□□□ -0.49
HDAC3-208ENST00000476739 SCAF8Q9UPN6 1271 aaKnown RBP11.98□□□□□ -0.49
HDAC3-208ENST00000476739 AKAP2Q9Y2D5 859 aa11.98□□□□□ -0.49
HDAC3-208ENST00000476739 PCDHB15Q9Y5E8 787 aa11.98□□□□□ -0.49
HDAC3-208ENST00000476739 FPGT-TNNI3KV9GXZ4 949 aa11.98□□□□□ -0.49
HDAC3-208ENST00000476739 AOX1Q06278 1338 aa11.97□□□□□ -0.49
HDAC3-208ENST00000476739 TRAF5O00463 557 aa11.97□□□□□ -0.49
HDAC3-208ENST00000476739 FRAT2O75474 233 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-208ENST00000476739 SCARF1Q14162 830 aa11.97□□□□□ -0.49
HDAC3-208ENST00000476739 NBPF9Q3BBW0 867 aa11.97□□□□□ -0.49
HDAC3-208ENST00000476739 EAF2Q96CJ1 260 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-208ENST00000476739 GLIS2Q9BZE0 524 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-208ENST00000476739 APBB1O00213 710 aa11.96□□□□□ -0.49
HDAC3-208ENST00000476739 WNT10BO00744 389 aa11.96□□□□□ -0.49
HDAC3-208ENST00000476739 RASGRF1Q13972 1273 aa11.96□□□□□ -0.49
HDAC3-208ENST00000476739 OGFOD1Q8N543 542 aa11.96□□□□□ -0.49
HDAC3-208ENST00000476739 RHPN1Q8TCX5 695 aa11.96□□□□□ -0.49
HDAC3-208ENST00000476739 ZC3H15Q8WU90 426 aaKnown RBP11.96□□□□□ -0.49
HDAC3-208ENST00000476739 DBNDD2Q9BQY9 259 aa11.96□□□□□ -0.49
HDAC3-208ENST00000476739 CCDC8Q9H0W5 538 aaPredicted RBP11.96□□□□□ -0.49
HDAC3-208ENST00000476739 IL1RAPL2Q9NP60 686 aa11.96□□□□□ -0.49
HDAC3-208ENST00000476739 TLR7Q9NYK1 1049 aaKnown RBP11.96□□□□□ -0.49
HDAC3-208ENST00000476739 ADM5C9JUS6 153 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 HMMRO75330 724 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 CENPBP07199 599 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-208ENST00000476739 APLP1P51693 650 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 CFAP100Q494V2 611 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 ANGEL2Q5VTE6 544 aaKnown RBP11.95□□□□□ -0.5
HDAC3-208ENST00000476739 PI16Q6UXB8 463 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 USP48Q86UV5 1035 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 ZBED3Q96IU2 234 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-208ENST00000476739 GPR108Q9NPR9 543 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 GGA3Q9NZ52 723 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 DBNLQ9UJU6 430 aaKnown RBP11.95□□□□□ -0.5
HDAC3-208ENST00000476739 HDAC9Q9UKV0 1011 aa11.95□□□□□ -0.5
HDAC3-208ENST00000476739 TTF2Q9UNY4 1162 aaKnown RBP11.95□□□□□ -0.5
HDAC3-208ENST00000476739 MCAMP43121 646 aa11.94□□□□□ -0.5
HDAC3-208ENST00000476739 EXOC6Q8TAG9 804 aa11.94□□□□□ -0.5
HDAC3-208ENST00000476739 PRMT6Q96LA8 375 aaPredicted RBP11.94□□□□□ -0.5
HDAC3-208ENST00000476739 BCL11AQ9H165 835 aa11.94□□□□□ -0.5
HDAC3-208ENST00000476739 GNL3LQ9NVN8 582 aaKnown RBP11.94□□□□□ -0.5
HDAC3-208ENST00000476739 HMG20BQ9P0W2 317 aa11.94□□□□□ -0.5
HDAC3-208ENST00000476739 DENND2AQ9ULE3 1009 aa11.94□□□□□ -0.5
HDAC3-208ENST00000476739 ZBTB22O15209 634 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 ARID4AP29374 1257 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-208ENST00000476739 PRDX5P30044 214 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 IRX6P78412 446 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-208ENST00000476739 GORABQ5T7V8 394 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 CST9Q5W186 159 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 CDC37L1Q7L3B6 337 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 ERC1Q8IUD2 1116 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 MTMR14Q8NCE2 650 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 WDR66Q8TBY9 1149 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 TBC1D22AQ8WUA7 517 aa11.93□□□□□ -0.5
HDAC3-208ENST00000476739 DCPSQ96C86 337 aaKnown RBP11.93□□□□□ -0.5
HDAC3-208ENST00000476739 AKAP11Q9UKA4 1901 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 SPDYE2BA6NHP3 402 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 SEMA3EO15041 775 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 SMARCA5O60264 1052 aaPredicted RBP11.92□□□□□ -0.5
HDAC3-208ENST00000476739 SPDYE6P0CI01 402 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 CRKP46108 304 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 RBM5P52756 815 aaKnown RBP eCLIP11.92□□□□□ -0.5
HDAC3-208ENST00000476739 DLGAP5Q15398 846 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 HSP90AB4PQ58FF6 505 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 PRAMEF18Q5VWM3 479 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms