RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 DOCK3Q8IZD9 2030 aa6.49□□□□□ -1.37
USP4-209ENST00000475873 COL1A1P02452 1464 aaPredicted RBP6.48□□□□□ -1.37
USP4-209ENST00000475873 BTBD19C9JJ37 291 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 ANXA1P04083 346 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 PSMC4P43686 418 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 PRMT2P55345 433 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 PRKCZQ05513 592 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 SF3B3Q15393 1217 aaKnown RBP6.48□□□□□ -1.37
USP4-209ENST00000475873 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.48□□□□□ -1.37
USP4-209ENST00000475873 ALYREFQ86V81 257 aaKnown RBP6.48□□□□□ -1.37
USP4-209ENST00000475873 DEFB118Q96PH6 123 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 SEMA6BQ9H3T3 888 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 PAK6Q9NQU5 681 aaPredicted RBP6.48□□□□□ -1.37
USP4-209ENST00000475873 MYPNQ86TC9 1320 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 SH3TC1Q8TE82 1336 aa6.48□□□□□ -1.37
USP4-209ENST00000475873 REV3LO60673 3130 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 DDX60LQ5H9U9 1706 aaKnown RBP6.47□□□□□ -1.37
USP4-209ENST00000475873 UNCXA6NJT0 531 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 DIAPH1O60610 1272 aaKnown RBP6.47□□□□□ -1.37
USP4-209ENST00000475873 GNRH1P01148 92 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 ELNP15502 786 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 AMER1Q5JTC6 1135 aaPredicted RBP6.47□□□□□ -1.37
USP4-209ENST00000475873 RAET1EQ8TD07 263 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 SEC31BQ9NQW1 1179 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 TRMT112Q9UI30 125 aaKnown RBP6.47□□□□□ -1.37
USP4-209ENST00000475873 CPA4Q9UI42 421 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 ECM29Q5VYK3 1845 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 MGAMO43451 1857 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 PFASO15067 1338 aa6.47□□□□□ -1.37
USP4-209ENST00000475873 PPP1R12BO60237 982 aaPredicted RBP6.46□□□□□ -1.38
USP4-209ENST00000475873 TFRCP02786 760 aaKnown RBP6.46□□□□□ -1.38
USP4-209ENST00000475873 INHAP05111 366 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 EIF4A1P60842 406 aaKnown RBP6.46□□□□□ -1.38
USP4-209ENST00000475873 RPS8P62241 208 aaKnown RBP6.46□□□□□ -1.38
USP4-209ENST00000475873 MDM2Q00987 491 aaPredicted RBP6.46□□□□□ -1.38
USP4-209ENST00000475873 MYO9BQ13459 2157 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 VGLL4Q14135 290 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 ZNF697Q5TEC3 545 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 PODNQ7Z5L7 613 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 NECAB2Q7Z6G3 386 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 TXNRD3Q86VQ6 643 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 KIAA0825Q8IV33 1275 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 ANKRD13AQ8IZ07 590 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 POLR3GLQ9BT43 218 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 BIN2Q9UBW5 565 aaPredicted RBP6.46□□□□□ -1.38
USP4-209ENST00000475873 GGA1Q9UJY5 639 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 ARIH1Q9Y4X5 557 aaPredicted RBP6.46□□□□□ -1.38
USP4-209ENST00000475873 WDFY4Q6ZS81 3184 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 ZNF804BA4D1E1 1349 aa6.46□□□□□ -1.38
USP4-209ENST00000475873 CLRN2A0PK11 232 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 UBXN2AP68543 259 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 KIF22Q14807 665 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 CERS5Q8N5B7 392 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 ADAMTS19Q8TE59 1207 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 FAM89AQ96GI7 184 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 NECAB3Q96P71 396 aaPredicted RBP6.45□□□□□ -1.38
USP4-209ENST00000475873 LRFN3Q9BTN0 628 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 RSPH6AQ9H0K4 717 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 TCF20Q9UGU0 1960 aaKnown RBP6.45□□□□□ -1.38
USP4-209ENST00000475873 FAM205AQ6ZU69 1335 aa6.45□□□□□ -1.38
USP4-209ENST00000475873 CFAP54Q96N23 3096 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 G3V3G9 751 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 U2SURPO15042 1029 aaKnown RBP6.44□□□□□ -1.38
USP4-209ENST00000475873 ADCY3O60266 1144 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 FMNL1O95466 1100 aaPredicted RBP6.44□□□□□ -1.38
USP4-209ENST00000475873 FOSL2P15408 326 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 KLRK1P26718 216 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 PRKAR2BP31323 418 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 IREB2P48200 963 aaKnown RBP6.44□□□□□ -1.38
USP4-209ENST00000475873 GTF2A2P52657 109 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 MOGSQ13724 837 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 DCAF8Q5TAQ9 597 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 STRIP1Q5VSL9 837 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 OGFOD1Q8N543 542 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 SLAIN1Q8ND83 568 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.44□□□□□ -1.38
USP4-209ENST00000475873 TEPSINQ96N21 525 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 C11orf16Q9NQ32 467 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 ANKIB1Q9P2G1 1089 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 ZDBF2Q9HCK1 2354 aa6.44□□□□□ -1.38
USP4-209ENST00000475873 LTBP2Q14767 1821 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 IRF6O14896 467 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 BCRP11274 1271 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 FLT3LGP49771 235 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 RASA3Q14644 834 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 TAF7Q15545 349 aaPredicted RBP6.43□□□□□ -1.38
USP4-209ENST00000475873 LRRC26Q2I0M4 334 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 RTL5Q5HYW3 569 aaPredicted RBP6.43□□□□□ -1.38
USP4-209ENST00000475873 C9orf50Q5SZB4 431 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 PRMT6Q96LA8 375 aaPredicted RBP6.43□□□□□ -1.38
USP4-209ENST00000475873 UHRF1Q96T88 793 aaPredicted RBP6.43□□□□□ -1.38
USP4-209ENST00000475873 ZCCHC17Q9NP64 241 aaKnown RBP6.43□□□□□ -1.38
USP4-209ENST00000475873 PPP2R3BQ9Y5P8 575 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 SNCAIPQ9Y6H5 919 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 CHD7Q9P2D1 2997 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 CACNA1GO43497 2377 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 CHD9Q3L8U1 2897 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 MED23Q9ULK4 1368 aa6.43□□□□□ -1.38
USP4-209ENST00000475873 SPDYE2BA6NHP3 402 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 SPDYE5A6NIY4 337 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms