RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 CWF19L2Q2TBE0 894 aaKnown RBP16.12■□□□□ 0.17
SKA3-206ENST00000475251 SUPT20HL1Q3ZLR7 823 aa16.12■□□□□ 0.17
SKA3-206ENST00000475251 IFNL1Q8IU54 200 aa16.12■□□□□ 0.17
SKA3-206ENST00000475251 MYH16Q9H6N6 1097 aa16.12■□□□□ 0.17
SKA3-206ENST00000475251 TRIM17Q9Y577 477 aa16.12■□□□□ 0.17
SKA3-206ENST00000475251 MTMR14Q8NCE2 650 aa16.11■□□□□ 0.17
SKA3-206ENST00000475251 ERO1AQ96HE7 468 aa16.11■□□□□ 0.17
SKA3-206ENST00000475251 CD209Q9NNX6 404 aa16.11■□□□□ 0.17
SKA3-206ENST00000475251 CHRNDQ07001 517 aa16.1■□□□□ 0.17
SKA3-206ENST00000475251 GCKRQ14397 625 aa16.1■□□□□ 0.17
SKA3-206ENST00000475251 TSPYL6Q8N831 410 aa16.1■□□□□ 0.17
SKA3-206ENST00000475251 WNK4Q96J92 1243 aa16.1■□□□□ 0.17
SKA3-206ENST00000475251 R3HDMLQ9H3Y0 253 aa16.1■□□□□ 0.17
SKA3-206ENST00000475251 ECM29Q5VYK3 1845 aa16.1■□□□□ 0.17
SKA3-206ENST00000475251 LAMB1P07942 1786 aa16.09■□□□□ 0.17
SKA3-206ENST00000475251 ANKRD18BA2A2Z9 1011 aa16.09■□□□□ 0.17
SKA3-206ENST00000475251 KLRK1P26718 216 aa16.09■□□□□ 0.17
SKA3-206ENST00000475251 IREB2P48200 963 aaKnown RBP16.09■□□□□ 0.17
SKA3-206ENST00000475251 FKBP1AP62942 108 aaKnown RBP16.09■□□□□ 0.17
SKA3-206ENST00000475251 C15orf52Q6ZUT6 534 aaKnown RBP16.09■□□□□ 0.17
SKA3-206ENST00000475251 OTOP1Q7RTM1 612 aa16.09■□□□□ 0.17
SKA3-206ENST00000475251 ZNF804AQ7Z570 1209 aa16.09■□□□□ 0.17
SKA3-206ENST00000475251 PRKRIP1Q9H875 184 aaPredicted RBP16.09■□□□□ 0.17
SKA3-206ENST00000475251 CSF1RP07333 972 aa16.08■□□□□ 0.16
SKA3-206ENST00000475251 TWISTNBQ3B726 338 aaPredicted RBP16.08■□□□□ 0.16
SKA3-206ENST00000475251 ABCB7O75027 752 aa16.07■□□□□ 0.16
SKA3-206ENST00000475251 ANKRD13AQ8IZ07 590 aa16.07■□□□□ 0.16
SKA3-206ENST00000475251 LINS1Q8NG48 757 aa16.07■□□□□ 0.16
SKA3-206ENST00000475251 RBBP6Q7Z6E9 1792 aaKnown RBP16.06■□□□□ 0.16
SKA3-206ENST00000475251 SPDYE2BA6NHP3 402 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 IGF2BP3O00425 579 aaKnown RBP eCLIP16.06■□□□□ 0.16
SKA3-206ENST00000475251 SPDYE6P0CI01 402 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 IL1R1P14778 569 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 IFIT5Q13325 482 aaKnown RBP16.06■□□□□ 0.16
SKA3-206ENST00000475251 TNFAIP1Q13829 316 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 ARHGEF6Q15052 776 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 CFAP100Q494V2 611 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 VEZTQ9HBM0 779 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.06■□□□□ 0.16
SKA3-206ENST00000475251 FZD1Q9UP38 647 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 PTPN22Q9Y2R2 807 aa16.06■□□□□ 0.16
SKA3-206ENST00000475251 SSC5DA1L4H1 1573 aa16.05■□□□□ 0.16
SKA3-206ENST00000475251 CLRN2A0PK11 232 aa16.05■□□□□ 0.16
SKA3-206ENST00000475251 F8W031 263 aaPredicted RBP16.05■□□□□ 0.16
SKA3-206ENST00000475251 RBM5P52756 815 aaKnown RBP eCLIP16.05■□□□□ 0.16
SKA3-206ENST00000475251 CASP7P55210 303 aa16.05■□□□□ 0.16
SKA3-206ENST00000475251 FLIIQ13045 1269 aa16.05■□□□□ 0.16
SKA3-206ENST00000475251 FKBP5Q13451 457 aaPredicted RBP16.05■□□□□ 0.16
SKA3-206ENST00000475251 CERS5Q8N5B7 392 aa16.05■□□□□ 0.16
SKA3-206ENST00000475251 DNAAF4Q8WXU2 420 aa16.05■□□□□ 0.16
SKA3-206ENST00000475251 TSR2Q969E8 191 aaKnown RBP16.05■□□□□ 0.16
SKA3-206ENST00000475251 CLMNQ96JQ2 1002 aa16.05■□□□□ 0.16
SKA3-206ENST00000475251 EFCC1Q9HA90 598 aa16.05■□□□□ 0.16
SKA3-206ENST00000475251 SP3Q02447 781 aa16.04■□□□□ 0.16
SKA3-206ENST00000475251 CRHR2Q13324 411 aa16.04■□□□□ 0.16
SKA3-206ENST00000475251 CCDC27Q2M243 656 aa16.04■□□□□ 0.16
SKA3-206ENST00000475251 HABP4Q5JVS0 413 aaKnown RBP16.04■□□□□ 0.16
SKA3-206ENST00000475251 G2E3Q7L622 706 aa16.04■□□□□ 0.16
SKA3-206ENST00000475251 ARMC5Q96C12 935 aa16.04■□□□□ 0.16
SKA3-206ENST00000475251 IRS2Q9Y4H2 1338 aa16.03■□□□□ 0.16
SKA3-206ENST00000475251 TESPA1A2RU30 521 aaPredicted RBP16.03■□□□□ 0.16
SKA3-206ENST00000475251 POTEFA5A3E0 1075 aa16.03■□□□□ 0.16
SKA3-206ENST00000475251 TAF5LO75529 589 aa16.03■□□□□ 0.16
SKA3-206ENST00000475251 RASA3Q14644 834 aa16.03■□□□□ 0.16
SKA3-206ENST00000475251 NBPF12Q5TAG4 269 aaPredicted RBP16.03■□□□□ 0.16
SKA3-206ENST00000475251 CD99L2Q8TCZ2 262 aa16.03■□□□□ 0.16
SKA3-206ENST00000475251 PRMT6Q96LA8 375 aaPredicted RBP16.03■□□□□ 0.16
SKA3-206ENST00000475251 TMEM106CQ9BVX2 250 aa16.03■□□□□ 0.16
SKA3-206ENST00000475251 CHMP3Q9Y3E7 222 aa16.03■□□□□ 0.16
SKA3-206ENST00000475251 USP2O75604 605 aaPredicted RBP16.02■□□□□ 0.16
SKA3-206ENST00000475251 TAF7LQ5H9L4 462 aa16.02■□□□□ 0.16
SKA3-206ENST00000475251 CACNA1FO60840 1977 aa16.02■□□□□ 0.15
SKA3-206ENST00000475251 IL16Q14005 1332 aa16.01■□□□□ 0.15
SKA3-206ENST00000475251 WDHD1O75717 1129 aaPredicted RBP16.01■□□□□ 0.15
SKA3-206ENST00000475251 CCDC57Q2TAC2 916 aa16.01■□□□□ 0.15
SKA3-206ENST00000475251 NBPF11Q86T75 865 aa16.01■□□□□ 0.15
SKA3-206ENST00000475251 HELBQ8NG08 1087 aaPredicted RBP16.01■□□□□ 0.15
SKA3-206ENST00000475251 A0A1B0GUL6 1792 aa16■□□□□ 0.15
SKA3-206ENST00000475251 TNNI2P48788 182 aa16■□□□□ 0.15
SKA3-206ENST00000475251 WWC1Q8IX03 1113 aa16■□□□□ 0.15
SKA3-206ENST00000475251 OPTNQ96CV9 577 aa16■□□□□ 0.15
SKA3-206ENST00000475251 ZFYVE28Q9HCC9 887 aa16■□□□□ 0.15
SKA3-206ENST00000475251 SERPINA10Q9UK55 444 aa16■□□□□ 0.15
SKA3-206ENST00000475251 PCDHAC2Q9Y5I4 1007 aa16■□□□□ 0.15
SKA3-206ENST00000475251 FAM205AQ6ZU69 1335 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 SNAP23O00161 211 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 GJA5P36382 358 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 GTF2A2P52657 109 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 FOXO4P98177 505 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 SPDYE2Q495Y8 402 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 MFSD14BQ5SR56 506 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 LDHAL6AQ6ZMR3 332 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 PTPN18Q99952 460 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 ELP3Q9H9T3 547 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 CNNM1Q9NRU3 951 aa15.99■□□□□ 0.15
SKA3-206ENST00000475251 HTTP42858 3142 aa15.98■□□□□ 0.15
SKA3-206ENST00000475251 TAF1CQ15572 869 aaPredicted RBP15.98■□□□□ 0.15
SKA3-206ENST00000475251 SLC9C1Q4G0N8 1177 aa15.98■□□□□ 0.15
SKA3-206ENST00000475251 ZNF333Q96JL9 665 aa15.98■□□□□ 0.15
SKA3-206ENST00000475251 ZNF70Q9UC06 446 aaPredicted RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms