RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ZNF804AQ7Z570 1209 aa21.02■□□□□ 0.96
USP40-212ENST00000473191 BEGAINQ9BUH8 593 aa21.01■□□□□ 0.95
USP40-212ENST00000473191 NOB1Q9ULX3 412 aaKnown RBP21.01■□□□□ 0.95
USP40-212ENST00000473191 FZD1Q9UP38 647 aa21.01■□□□□ 0.95
USP40-212ENST00000473191 KIF23Q02241 960 aaPredicted RBP21■□□□□ 0.95
USP40-212ENST00000473191 NOGQ13253 232 aa21■□□□□ 0.95
USP40-212ENST00000473191 FAM84BQ96KN1 310 aaPredicted RBP21■□□□□ 0.95
USP40-212ENST00000473191 PAPPA2Q9BXP8 1791 aa21■□□□□ 0.95
USP40-212ENST00000473191 UBE2Q2LH0YL09 131 aa20.99■□□□□ 0.95
USP40-212ENST00000473191 SLC10A3P09131 477 aa20.99■□□□□ 0.95
USP40-212ENST00000473191 UBE4AQ14139 1066 aa20.99■□□□□ 0.95
USP40-212ENST00000473191 RASAL3Q86YV0 1011 aa20.99■□□□□ 0.95
USP40-212ENST00000473191 VGLL2Q8N8G2 317 aa20.99■□□□□ 0.95
USP40-212ENST00000473191 HDAC9Q9UKV0 1011 aa20.99■□□□□ 0.95
USP40-212ENST00000473191 RFX5P48382 616 aaPredicted RBP20.98■□□□□ 0.95
USP40-212ENST00000473191 GRIK5Q16478 980 aa20.98■□□□□ 0.95
USP40-212ENST00000473191 TDRD7Q8NHU6 1098 aaKnown RBP20.98■□□□□ 0.95
USP40-212ENST00000473191 IQSEC3Q9UPP2 1182 aaPredicted RBP20.98■□□□□ 0.95
USP40-212ENST00000473191 PRKG1Q13976 671 aa20.97■□□□□ 0.95
USP40-212ENST00000473191 CFAP100Q494V2 611 aa20.97■□□□□ 0.95
USP40-212ENST00000473191 PRMT6Q96LA8 375 aaPredicted RBP20.97■□□□□ 0.95
USP40-212ENST00000473191 CLRN2A0PK11 232 aa20.96■□□□□ 0.95
USP40-212ENST00000473191 HIBADHP31937 336 aaKnown RBP20.96■□□□□ 0.95
USP40-212ENST00000473191 DLGAP5Q15398 846 aa20.96■□□□□ 0.95
USP40-212ENST00000473191 METTL24Q5JXM2 366 aa20.96■□□□□ 0.95
USP40-212ENST00000473191 CCDC102AQ96A19 550 aa20.96■□□□□ 0.95
USP40-212ENST00000473191 MROH5Q6ZUA9 1318 aa20.96■□□□□ 0.95
USP40-212ENST00000473191 RARSP54136 660 aaKnown RBP20.95■□□□□ 0.94
USP40-212ENST00000473191 CSRNP1Q96S65 589 aa20.95■□□□□ 0.94
USP40-212ENST00000473191 TNNQ9UQP3 1299 aa20.95■□□□□ 0.94
USP40-212ENST00000473191 CASP8AP2Q9UKL3 1982 aa20.95■□□□□ 0.94
USP40-212ENST00000473191 FAM205AQ6ZU69 1335 aa20.95■□□□□ 0.94
USP40-212ENST00000473191 ECM29Q5VYK3 1845 aa20.94■□□□□ 0.94
USP40-212ENST00000473191 SSC5DA1L4H1 1573 aa20.94■□□□□ 0.94
USP40-212ENST00000473191 SPDYE2BA6NHP3 402 aa20.94■□□□□ 0.94
USP40-212ENST00000473191 SPDYE6P0CI01 402 aa20.94■□□□□ 0.94
USP40-212ENST00000473191 FKBP1AP62942 108 aaKnown RBP20.94■□□□□ 0.94
USP40-212ENST00000473191 MFSD14BQ5SR56 506 aa20.94■□□□□ 0.94
USP40-212ENST00000473191 FBXO33Q7Z6M2 555 aa20.94■□□□□ 0.94
USP40-212ENST00000473191 MIER1Q8N108 512 aa20.94■□□□□ 0.94
USP40-212ENST00000473191 MTMR14Q8NCE2 650 aa20.94■□□□□ 0.94
USP40-212ENST00000473191 PDE8BO95263 885 aa20.93■□□□□ 0.94
USP40-212ENST00000473191 BCAMP50895 628 aa20.93■□□□□ 0.94
USP40-212ENST00000473191 FKBP1BP68106 108 aa20.93■□□□□ 0.94
USP40-212ENST00000473191 PTPN12Q05209 780 aaKnown RBP20.93■□□□□ 0.94
USP40-212ENST00000473191 MKRN3Q13064 507 aaKnown RBP20.93■□□□□ 0.94
USP40-212ENST00000473191 TTLL12Q14166 644 aaPredicted RBP20.93■□□□□ 0.94
USP40-212ENST00000473191 APOBEC3FQ8IUX4 373 aaKnown RBP20.93■□□□□ 0.94
USP40-212ENST00000473191 DEFB129Q9H1M3 183 aa20.93■□□□□ 0.94
USP40-212ENST00000473191 RNF186Q9NXI6 227 aa20.93■□□□□ 0.94
USP40-212ENST00000473191 ARAP2Q8WZ64 1704 aa20.92■□□□□ 0.94
USP40-212ENST00000473191 CT47B1P0C2W7 299 aaPredicted RBP20.92■□□□□ 0.94
USP40-212ENST00000473191 MMP14P50281 582 aa20.92■□□□□ 0.94
USP40-212ENST00000473191 CA12O43570 354 aa20.91■□□□□ 0.94
USP40-212ENST00000473191 TRPA1O75762 1119 aa20.91■□□□□ 0.94
USP40-212ENST00000473191 FGFR2P21802 821 aa20.91■□□□□ 0.94
USP40-212ENST00000473191 RBM5P52756 815 aaKnown RBP eCLIP20.91■□□□□ 0.94
USP40-212ENST00000473191 CHAF1AQ13111 956 aaPredicted RBP20.91■□□□□ 0.94
USP40-212ENST00000473191 ATG9AQ7Z3C6 839 aa20.91■□□□□ 0.94
USP40-212ENST00000473191 ABHD8Q96I13 439 aa20.91■□□□□ 0.94
USP40-212ENST00000473191 MEIS3Q99687 375 aa20.91■□□□□ 0.94
USP40-212ENST00000473191 TTF2Q9UNY4 1162 aaKnown RBP20.91■□□□□ 0.94
USP40-212ENST00000473191 CDAN1Q8IWY9 1227 aa20.9■□□□□ 0.94
USP40-212ENST00000473191 SIL1Q9H173 461 aa20.9■□□□□ 0.94
USP40-212ENST00000473191 VEZTQ9HBM0 779 aa20.9■□□□□ 0.94
USP40-212ENST00000473191 LRRFIP2Q9Y608 721 aaKnown RBP20.9■□□□□ 0.94
USP40-212ENST00000473191 EYA2O00167 538 aa20.89■□□□□ 0.93
USP40-212ENST00000473191 BCAR3O75815 825 aa20.89■□□□□ 0.93
USP40-212ENST00000473191 UBTFL1P0CB47 393 aaPredicted RBP20.89■□□□□ 0.93
USP40-212ENST00000473191 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.89■□□□□ 0.93
USP40-212ENST00000473191 ANGEL1Q9UNK9 670 aaKnown RBP20.89■□□□□ 0.93
USP40-212ENST00000473191 PA2G4Q9UQ80 394 aaKnown RBP20.89■□□□□ 0.93
USP40-212ENST00000473191 NBPF12Q5TAG4 269 aaPredicted RBP20.88■□□□□ 0.93
USP40-212ENST00000473191 VPS37DQ86XT2 251 aa20.88■□□□□ 0.93
USP40-212ENST00000473191 API5Q9BZZ5 524 aaKnown RBP20.88■□□□□ 0.93
USP40-212ENST00000473191 TDRD3Q9H7E2 651 aaKnown RBP20.88■□□□□ 0.93
USP40-212ENST00000473191 AKAP11Q9UKA4 1901 aa20.88■□□□□ 0.93
USP40-212ENST00000473191 COL1A1P02452 1464 aaPredicted RBP20.88■□□□□ 0.93
USP40-212ENST00000473191 NF2P35240 595 aa20.87■□□□□ 0.93
USP40-212ENST00000473191 CRKP46108 304 aa20.87■□□□□ 0.93
USP40-212ENST00000473191 LDLRAD1Q5T700 205 aa20.87■□□□□ 0.93
USP40-212ENST00000473191 RASA3Q14644 834 aa20.86■□□□□ 0.93
USP40-212ENST00000473191 PUM3Q15397 648 aaKnown RBP20.86■□□□□ 0.93
USP40-212ENST00000473191 CAVIN4Q5BKX8 364 aa20.86■□□□□ 0.93
USP40-212ENST00000473191 DZIP1LQ8IYY4 767 aaKnown RBP20.86■□□□□ 0.93
USP40-212ENST00000473191 CLMNQ96JQ2 1002 aa20.86■□□□□ 0.93
USP40-212ENST00000473191 MCOLN1Q9GZU1 580 aa20.86■□□□□ 0.93
USP40-212ENST00000473191 SAGE1Q9NXZ1 904 aa20.86■□□□□ 0.93
USP40-212ENST00000473191 ZNF70Q9UC06 446 aaPredicted RBP20.86■□□□□ 0.93
USP40-212ENST00000473191 MYO1BO43795 1136 aa20.85■□□□□ 0.93
USP40-212ENST00000473191 SPDYE2Q495Y8 402 aa20.85■□□□□ 0.93
USP40-212ENST00000473191 ARMC9Q7Z3E5 817 aa20.85■□□□□ 0.93
USP40-212ENST00000473191 SERPINA10Q9UK55 444 aa20.85■□□□□ 0.93
USP40-212ENST00000473191 FRAT2O75474 233 aaPredicted RBP20.84■□□□□ 0.93
USP40-212ENST00000473191 TRIM27P14373 513 aa20.84■□□□□ 0.93
USP40-212ENST00000473191 CACNB3P54284 484 aa20.84■□□□□ 0.93
USP40-212ENST00000473191 DIEXFQ68CQ4 756 aaKnown RBP20.84■□□□□ 0.93
USP40-212ENST00000473191 INTS3Q68E01 1043 aaKnown RBP20.84■□□□□ 0.93
USP40-212ENST00000473191 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.84■□□□□ 0.93
USP40-212ENST00000473191 TCP10L2B9ZVM9 353 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms