RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ADD2P35612 726 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 GYG1P46976 350 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 UBE3CQ15386 1083 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 RNF20Q5VTR2 975 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 MAP4K1Q92918 833 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 SNX21Q969T3 373 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 KIF2CQ99661 725 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 IL25Q9H293 177 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 IRS2Q9Y4H2 1338 aa15.4■□□□□ 0.06
VPS13D-205ENST00000473099 FRAT2O75474 233 aaPredicted RBP15.39■□□□□ 0.05
VPS13D-205ENST00000473099 UFL1O94874 794 aa15.39■□□□□ 0.05
VPS13D-205ENST00000473099 GPSM2P81274 684 aa15.39■□□□□ 0.05
VPS13D-205ENST00000473099 PI16Q6UXB8 463 aa15.39■□□□□ 0.05
VPS13D-205ENST00000473099 ZGPATQ8N5A5 531 aaKnown RBP15.39■□□□□ 0.05
VPS13D-205ENST00000473099 DSCC1Q9BVC3 393 aa15.39■□□□□ 0.05
VPS13D-205ENST00000473099 NSFL1CQ9UNZ2 370 aaKnown RBP15.39■□□□□ 0.05
VPS13D-205ENST00000473099 U3KPZ7 1027 aaPredicted RBP15.39■□□□□ 0.05
VPS13D-205ENST00000473099 PSME4Q14997 1843 aa15.38■□□□□ 0.05
VPS13D-205ENST00000473099 IDH1O75874 414 aaKnown RBP15.38■□□□□ 0.05
VPS13D-205ENST00000473099 ZKSCAN1P17029 563 aaPredicted RBP15.38■□□□□ 0.05
VPS13D-205ENST00000473099 GRIPAP1Q4V328 841 aa15.38■□□□□ 0.05
VPS13D-205ENST00000473099 CC2D2BQ6DHV5 1058 aa15.38■□□□□ 0.05
VPS13D-205ENST00000473099 HSCBQ8IWL3 235 aa15.38■□□□□ 0.05
VPS13D-205ENST00000473099 ZNF622Q969S3 477 aaKnown RBP eCLIP15.38■□□□□ 0.05
VPS13D-205ENST00000473099 MTFR1LQ9H019 292 aa15.38■□□□□ 0.05
VPS13D-205ENST00000473099 PIH1D3Q9NQM4 214 aaKnown RBP15.38■□□□□ 0.05
VPS13D-205ENST00000473099 MAST3O60307 1309 aa15.38■□□□□ 0.05
VPS13D-205ENST00000473099 DCAF8L1A6NGE4 600 aa15.37■□□□□ 0.05
VPS13D-205ENST00000473099 ST18O60284 1047 aa15.37■□□□□ 0.05
VPS13D-205ENST00000473099 POLD1P28340 1107 aa15.37■□□□□ 0.05
VPS13D-205ENST00000473099 PTH1RQ03431 593 aa15.37■□□□□ 0.05
VPS13D-205ENST00000473099 SLC9C2Q5TAH2 1124 aa15.37■□□□□ 0.05
VPS13D-205ENST00000473099 SPTY2D1Q68D10 685 aaPredicted RBP15.37■□□□□ 0.05
VPS13D-205ENST00000473099 ZNF589Q86UQ0 364 aaPredicted RBP15.37■□□□□ 0.05
VPS13D-205ENST00000473099 KCNB2Q92953 911 aa15.37■□□□□ 0.05
VPS13D-205ENST00000473099 LRP2BPQ9P2M1 347 aa15.37■□□□□ 0.05
VPS13D-205ENST00000473099 RBM8AQ9Y5S9 174 aaKnown RBP15.37■□□□□ 0.05
VPS13D-205ENST00000473099 COL1A1P02452 1464 aaPredicted RBP15.36■□□□□ 0.05
VPS13D-205ENST00000473099 ZBTB7AO95365 584 aa15.36■□□□□ 0.05
VPS13D-205ENST00000473099 PDE6AP16499 860 aa15.36■□□□□ 0.05
VPS13D-205ENST00000473099 NECTIN1Q15223 517 aa15.36■□□□□ 0.05
VPS13D-205ENST00000473099 MPNDQ8N594 471 aa15.36■□□□□ 0.05
VPS13D-205ENST00000473099 TBC1D16Q8TBP0 767 aa15.36■□□□□ 0.05
VPS13D-205ENST00000473099 WDR66Q8TBY9 1149 aa15.36■□□□□ 0.05
VPS13D-205ENST00000473099 EYA3Q99504 573 aa15.36■□□□□ 0.05
VPS13D-205ENST00000473099 SALL1Q9NSC2 1324 aa15.36■□□□□ 0.05
VPS13D-205ENST00000473099 MCM2P49736 904 aa15.35■□□□□ 0.05
VPS13D-205ENST00000473099 KRT32Q14532 448 aa15.35■□□□□ 0.05
VPS13D-205ENST00000473099 TDRD7Q8NHU6 1098 aaKnown RBP15.35■□□□□ 0.05
VPS13D-205ENST00000473099 OSBP2Q969R2 916 aa15.35■□□□□ 0.05
VPS13D-205ENST00000473099 SEC62Q99442 399 aaKnown RBP15.35■□□□□ 0.05
VPS13D-205ENST00000473099 TM6SF1Q9BZW5 370 aa15.35■□□□□ 0.05
VPS13D-205ENST00000473099 ZNF532Q9HCE3 1301 aa15.35■□□□□ 0.05
VPS13D-205ENST00000473099 CDK5RAP2Q96SN8 1893 aa15.35■□□□□ 0.05
VPS13D-205ENST00000473099 TCRBV5S4A2TA0A5A2 114 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 C6orf229H3BNL8 230 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 IL1R1P14778 569 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 KLRK1P26718 216 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 TSGA10IPQ3SY00 556 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 CREB3L3Q68CJ9 461 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 PRPF40BQ6NWY9 871 aaKnown RBP15.34■□□□□ 0.05
VPS13D-205ENST00000473099 DPP8Q6V1X1 898 aaPredicted RBP15.34■□□□□ 0.05
VPS13D-205ENST00000473099 ERICH6Q7L0X2 663 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 TBC1D2Q9BYX2 928 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 PDGFDQ9GZP0 370 aaPredicted RBP15.34■□□□□ 0.05
VPS13D-205ENST00000473099 CTNNA3Q9UI47 895 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 SNX14Q9Y5W7 946 aa15.34■□□□□ 0.05
VPS13D-205ENST00000473099 RPAP1Q9BWH6 1393 aaPredicted RBP15.34■□□□□ 0.05
VPS13D-205ENST00000473099 BAZ2AQ9UIF9 1905 aaKnown RBP15.33■□□□□ 0.05
VPS13D-205ENST00000473099 WTIPA6NIX2 430 aaPredicted RBP15.33■□□□□ 0.04
VPS13D-205ENST00000473099 M0R2C6 588 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 GPAA1O43292 621 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 HSPD1P10809 573 aaKnown RBP15.33■□□□□ 0.04
VPS13D-205ENST00000473099 GNAT2P19087 354 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 PSMA5P28066 241 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 CCDC129Q6ZRS4 1044 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 MAGEB6Q8N7X4 407 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 AIDAQ96BJ3 306 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 COA1Q9GZY4 146 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 ABCF2Q9UG63 623 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 POLLQ9UGP5 575 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 WWC3Q9ULE0 1092 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 PALD1Q9ULE6 856 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 IQSEC3Q9UPP2 1182 aaPredicted RBP15.33■□□□□ 0.04
VPS13D-205ENST00000473099 LAMB1P07942 1786 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 ARFGEF1Q9Y6D6 1849 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 FER1L6Q2WGJ9 1857 aa15.33■□□□□ 0.04
VPS13D-205ENST00000473099 FOCADQ5VW36 1801 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 SLC27A2O14975 620 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 TGFB2P61812 414 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 TXNRD3Q86VQ6 643 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 SUPT20HQ8NEM7 779 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 TBC1D22AQ8WUA7 517 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 ZC3H12CQ9C0D7 883 aaKnown RBP15.32■□□□□ 0.04
VPS13D-205ENST00000473099 CD209Q9NNX6 404 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 RAI14Q9P0K7 980 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 ZMYM6O95789 1325 aa15.32■□□□□ 0.04
VPS13D-205ENST00000473099 ZNF646O15015 1829 aaPredicted RBP15.31■□□□□ 0.04
VPS13D-205ENST00000473099 K7ELQ4 463 aaPredicted RBP15.31■□□□□ 0.04
VPS13D-205ENST00000473099 CHRNA5P30532 468 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms