RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ECM1Q16610 540 aa7.09□□□□□ -1.27
VPS13A-210ENST00000471439 PDE12Q6L8Q7 609 aaKnown RBP7.09□□□□□ -1.27
VPS13A-210ENST00000471439 TXNDC11Q6PKC3 985 aa7.09□□□□□ -1.27
VPS13A-210ENST00000471439 HHIPQ96QV1 700 aa7.09□□□□□ -1.27
VPS13A-210ENST00000471439 LACRTQ9GZZ8 138 aa7.09□□□□□ -1.27
VPS13A-210ENST00000471439 FOXD3Q9UJU5 478 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-210ENST00000471439 FRMPD1Q5SYB0 1578 aa7.08□□□□□ -1.28
VPS13A-210ENST00000471439 ARHGEF40Q8TER5 1519 aa7.08□□□□□ -1.28
VPS13A-210ENST00000471439 KIF4AO95239 1232 aa7.08□□□□□ -1.28
VPS13A-210ENST00000471439 APBA3O96018 575 aa7.08□□□□□ -1.28
VPS13A-210ENST00000471439 ELNP15502 786 aa7.08□□□□□ -1.28
VPS13A-210ENST00000471439 RAC1P63000 192 aa7.08□□□□□ -1.28
VPS13A-210ENST00000471439 FKBP4Q02790 459 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS13A-210ENST00000471439 TTC9Q92623 222 aa7.08□□□□□ -1.28
VPS13A-210ENST00000471439 WDR7Q9Y4E6 1490 aa7.08□□□□□ -1.28
VPS13A-210ENST00000471439 FANCAO15360 1455 aa7.07□□□□□ -1.28
VPS13A-210ENST00000471439 CDC25BP30305 580 aa7.07□□□□□ -1.28
VPS13A-210ENST00000471439 HYAL2Q12891 473 aa7.07□□□□□ -1.28
VPS13A-210ENST00000471439 MBTPS1Q14703 1052 aa7.07□□□□□ -1.28
VPS13A-210ENST00000471439 CEP135Q66GS9 1140 aa7.07□□□□□ -1.28
VPS13A-210ENST00000471439 IL22RA1Q8N6P7 574 aa7.07□□□□□ -1.28
VPS13A-210ENST00000471439 EREGO14944 169 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 ICMTO60725 284 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 ADAM23O75077 832 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 FAM13AO94988 1023 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 GATA4P43694 442 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 SF3B2Q13435 895 aaKnown RBP7.06□□□□□ -1.28
VPS13A-210ENST00000471439 NCAPG2Q86XI2 1143 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 CEP120Q8N960 986 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 TPSG1Q9NRR2 321 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 MTMR7Q9Y216 660 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 PTPRKQ15262 1439 aa7.06□□□□□ -1.28
VPS13A-210ENST00000471439 CAMSAP1Q5T5Y3 1602 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 UACAQ9BZF9 1416 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 TNFRSF21O75509 655 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 ITGB7P26010 798 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 ARHGAP4P98171 946 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 ADGRE1Q14246 886 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 ALKBH2Q6NS38 261 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 XKR5Q6UX68 686 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 TXNDC2Q86VQ3 553 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 FBXO11Q86XK2 927 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 GLYCTKQ8IVS8 523 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 GJD3Q8N144 294 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 RBSNQ9H1K0 784 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 SH2B1Q9NRF2 756 aaPredicted RBP7.05□□□□□ -1.28
VPS13A-210ENST00000471439 LATS2Q9NRM7 1088 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 SALL4Q9UJQ4 1053 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 USP21Q9UK80 565 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 LRP5O75197 1615 aa7.05□□□□□ -1.28
VPS13A-210ENST00000471439 PCSK2P16519 638 aa7.04□□□□□ -1.28
VPS13A-210ENST00000471439 EPHA1P21709 976 aa7.04□□□□□ -1.28
VPS13A-210ENST00000471439 CES1P23141 567 aa7.04□□□□□ -1.28
VPS13A-210ENST00000471439 SETDB1Q15047 1291 aa7.04□□□□□ -1.28
VPS13A-210ENST00000471439 AEBP1Q8IUX7 1158 aa7.04□□□□□ -1.28
VPS13A-210ENST00000471439 GALNT11Q8NCW6 608 aa7.04□□□□□ -1.28
VPS13A-210ENST00000471439 PBX4Q9BYU1 374 aa7.04□□□□□ -1.28
VPS13A-210ENST00000471439 EGFL7Q9UHF1 273 aa7.04□□□□□ -1.28
VPS13A-210ENST00000471439 LINC01387J3KSC0 135 aa7.03□□□□□ -1.28
VPS13A-210ENST00000471439 K7ELQ4 463 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-210ENST00000471439 NFKBIEO00221 500 aa7.03□□□□□ -1.28
VPS13A-210ENST00000471439 POLR3DP05423 398 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-210ENST00000471439 B4GALNT3Q6L9W6 998 aa7.03□□□□□ -1.28
VPS13A-210ENST00000471439 SPACA7Q96KW9 195 aa7.03□□□□□ -1.28
VPS13A-210ENST00000471439 NACC1Q96RE7 527 aa7.03□□□□□ -1.28
VPS13A-210ENST00000471439 POP1Q99575 1024 aaKnown RBP7.03□□□□□ -1.28
VPS13A-210ENST00000471439 CARD10Q9BWT7 1032 aa7.03□□□□□ -1.28
VPS13A-210ENST00000471439 TNIKQ9UKE5 1360 aa7.03□□□□□ -1.28
VPS13A-210ENST00000471439 ARHGEF12Q9NZN5 1544 aa7.02□□□□□ -1.29
VPS13A-210ENST00000471439 DLL1O00548 723 aa7.02□□□□□ -1.29
VPS13A-210ENST00000471439 TM4SF5O14894 197 aa7.02□□□□□ -1.29
VPS13A-210ENST00000471439 NRG1Q02297 640 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-210ENST00000471439 RSPO4Q2I0M5 234 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-210ENST00000471439 DTWD1Q8N5C7 304 aa7.02□□□□□ -1.29
VPS13A-210ENST00000471439 LENG1Q96BZ8 264 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-210ENST00000471439 DZANK1Q9NVP4 752 aa7.02□□□□□ -1.29
VPS13A-210ENST00000471439 LRRC7Q96NW7 1537 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 C9orf172C9J069 976 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 PHACTR2O75167 634 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 SMNDC1O75940 238 aaKnown RBP eCLIP7.01□□□□□ -1.29
VPS13A-210ENST00000471439 ALX3O95076 343 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 WISP1O95388 367 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 RPLP1P05386 114 aaKnown RBP7.01□□□□□ -1.29
VPS13A-210ENST00000471439 NOS3P29474 1203 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 FOXD4L6Q3SYB3 417 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-210ENST00000471439 USPL1Q5W0Q7 1092 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 FOXD4L3Q6VB84 417 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-210ENST00000471439 TXNRD3Q86VQ6 643 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 AGGF1Q8N302 714 aaeCLIP7.01□□□□□ -1.29
VPS13A-210ENST00000471439 TTC16Q8NEE8 873 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 SNX29Q8TEQ0 813 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 ZKSCAN3Q9BRR0 538 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 KCNK4Q9NYG8 393 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 PPME1Q9Y570 386 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 RAPGEF6Q8TEU7 1601 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 CPS1P31327 1500 aa7.01□□□□□ -1.29
VPS13A-210ENST00000471439 PHLDB1Q86UU1 1377 aa7□□□□□ -1.29
VPS13A-210ENST00000471439 CDC27P30260 824 aa7□□□□□ -1.29
VPS13A-210ENST00000471439 IREB2P48200 963 aaKnown RBP7□□□□□ -1.29
VPS13A-210ENST00000471439 NKAPLQ5M9Q1 402 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms