RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 PPP2R3BQ9Y5P8 575 aa11.51□□□□□ -0.57
SF3A1-206ENST00000471037 LAMB1P07942 1786 aa11.51□□□□□ -0.57
SF3A1-206ENST00000471037 SSC5DA1L4H1 1573 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 A0A1B0GUL6 1792 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 ANKRD18BA2A2Z9 1011 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 ALDH1A1P00352 501 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 KCNJ4P48050 445 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 SLFN5Q08AF3 891 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 FKBP5Q13451 457 aaPredicted RBP11.5□□□□□ -0.57
SF3A1-206ENST00000471037 PRPF38BQ5VTL8 546 aaKnown RBP11.5□□□□□ -0.57
SF3A1-206ENST00000471037 FBXO46Q6PJ61 603 aaPredicted RBP11.5□□□□□ -0.57
SF3A1-206ENST00000471037 CERS5Q8N5B7 392 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 DEFB129Q9H1M3 183 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 FANCIQ9NVI1 1328 aa11.5□□□□□ -0.57
SF3A1-206ENST00000471037 ECM29Q5VYK3 1845 aa11.49□□□□□ -0.57
SF3A1-206ENST00000471037 UNCXA6NJT0 531 aa11.49□□□□□ -0.57
SF3A1-206ENST00000471037 FKTNO75072 461 aa11.49□□□□□ -0.57
SF3A1-206ENST00000471037 ZBTB48P10074 688 aaPredicted RBP11.49□□□□□ -0.57
SF3A1-206ENST00000471037 IL1R1P14778 569 aa11.49□□□□□ -0.57
SF3A1-206ENST00000471037 INHBEP58166 350 aa11.49□□□□□ -0.57
SF3A1-206ENST00000471037 FKBP1AP62942 108 aaKnown RBP11.49□□□□□ -0.57
SF3A1-206ENST00000471037 MKRN3Q13064 507 aaKnown RBP11.49□□□□□ -0.57
SF3A1-206ENST00000471037 PRKG1Q13976 671 aa11.49□□□□□ -0.57
SF3A1-206ENST00000471037 DLGAP5Q15398 846 aa11.49□□□□□ -0.57
SF3A1-206ENST00000471037 ANGEL1Q9UNK9 670 aaKnown RBP11.49□□□□□ -0.57
SF3A1-206ENST00000471037 CACNA1FO60840 1977 aa11.48□□□□□ -0.57
SF3A1-206ENST00000471037 MANSC4A6NHS7 340 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-206ENST00000471037 SNAP23O00161 211 aa11.48□□□□□ -0.57
SF3A1-206ENST00000471037 TAF5LO75529 589 aa11.48□□□□□ -0.57
SF3A1-206ENST00000471037 FOXO4P98177 505 aa11.48□□□□□ -0.57
SF3A1-206ENST00000471037 IFIT5Q13325 482 aaKnown RBP11.48□□□□□ -0.57
SF3A1-206ENST00000471037 ZNF804AQ7Z570 1209 aa11.48□□□□□ -0.57
SF3A1-206ENST00000471037 TRMT2AQ8IZ69 625 aaKnown RBP11.48□□□□□ -0.57
SF3A1-206ENST00000471037 CDCA7LQ96GN5 454 aa11.48□□□□□ -0.57
SF3A1-206ENST00000471037 R3HDMLQ9H3Y0 253 aa11.48□□□□□ -0.57
SF3A1-206ENST00000471037 SPDYE2BA6NHP3 402 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 MYO1BO43795 1136 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 PPP1R12BO60237 982 aaPredicted RBP11.47□□□□□ -0.57
SF3A1-206ENST00000471037 VAMP4O75379 141 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 SPDYE6P0CI01 402 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 KCNA4P22459 653 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 BEND3Q5T5X7 828 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 IFNL1Q8IU54 200 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 SLC10A4Q96EP9 437 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 FZD1Q9UP38 647 aa11.47□□□□□ -0.57
SF3A1-206ENST00000471037 SUPT20HL1Q3ZLR7 823 aa11.46□□□□□ -0.57
SF3A1-206ENST00000471037 CFAP100Q494V2 611 aa11.46□□□□□ -0.57
SF3A1-206ENST00000471037 HELBQ8NG08 1087 aaPredicted RBP11.46□□□□□ -0.57
SF3A1-206ENST00000471037 WNK4Q96J92 1243 aa11.46□□□□□ -0.57
SF3A1-206ENST00000471037 CLMNQ96JQ2 1002 aa11.46□□□□□ -0.57
SF3A1-206ENST00000471037 PRMT6Q96LA8 375 aaPredicted RBP11.46□□□□□ -0.57
SF3A1-206ENST00000471037 SPINK5Q9NQ38 1064 aaPredicted RBP11.46□□□□□ -0.57
SF3A1-206ENST00000471037 PCDHAC2Q9Y5I4 1007 aa11.46□□□□□ -0.57
SF3A1-206ENST00000471037 FAM205AQ6ZU69 1335 aa11.45□□□□□ -0.58
SF3A1-206ENST00000471037 CLRN2A0PK11 232 aa11.45□□□□□ -0.58
SF3A1-206ENST00000471037 IGF2BP3O00425 579 aaKnown RBP eCLIP11.45□□□□□ -0.58
SF3A1-206ENST00000471037 EXOSC9Q06265 439 aaKnown RBP11.45□□□□□ -0.58
SF3A1-206ENST00000471037 LMBR1LQ6UX01 489 aa11.45□□□□□ -0.58
SF3A1-206ENST00000471037 CHMP3Q9Y3E7 222 aa11.45□□□□□ -0.58
SF3A1-206ENST00000471037 ARAP2Q8WZ64 1704 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 AOX1Q06278 1338 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 F6X3S4 739 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 F8W031 263 aaPredicted RBP11.44□□□□□ -0.58
SF3A1-206ENST00000471037 GRM8O00222 908 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 IREB2P48200 963 aaKnown RBP11.44□□□□□ -0.58
SF3A1-206ENST00000471037 TNFAIP1Q13829 316 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 CCDC57Q2TAC2 916 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 EPHA10Q5JZY3 1008 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 NBPF12Q5TAG4 269 aaPredicted RBP11.44□□□□□ -0.58
SF3A1-206ENST00000471037 LDHAL6AQ6ZMR3 332 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 PPP4R3CPQ6ZMV5 832 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 OTOP1Q7RTM1 612 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 ANKRD13AQ8IZ07 590 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 VEZTQ9HBM0 779 aa11.44□□□□□ -0.58
SF3A1-206ENST00000471037 TESPA1A2RU30 521 aaPredicted RBP11.43□□□□□ -0.58
SF3A1-206ENST00000471037 USP2O75604 605 aaPredicted RBP11.43□□□□□ -0.58
SF3A1-206ENST00000471037 GJA5P36382 358 aa11.43□□□□□ -0.58
SF3A1-206ENST00000471037 UBE4AQ14139 1066 aa11.43□□□□□ -0.58
SF3A1-206ENST00000471037 RASA3Q14644 834 aa11.43□□□□□ -0.58
SF3A1-206ENST00000471037 SPDYE2Q495Y8 402 aa11.43□□□□□ -0.58
SF3A1-206ENST00000471037 INTS3Q68E01 1043 aaKnown RBP11.43□□□□□ -0.58
SF3A1-206ENST00000471037 TDRD7Q8NHU6 1098 aaKnown RBP11.43□□□□□ -0.58
SF3A1-206ENST00000471037 ZNF594Q96JF6 807 aaPredicted RBP11.43□□□□□ -0.58
SF3A1-206ENST00000471037 CNNM1Q9NRU3 951 aa11.43□□□□□ -0.58
SF3A1-206ENST00000471037 SERPINA10Q9UK55 444 aa11.43□□□□□ -0.58
SF3A1-206ENST00000471037 TRIM17Q9Y577 477 aa11.43□□□□□ -0.58
SF3A1-206ENST00000471037 OTOFQ9HC10 1997 aa11.43□□□□□ -0.58
SF3A1-206ENST00000471037 ALDH1L1O75891 902 aa11.42□□□□□ -0.58
SF3A1-206ENST00000471037 CT47B1P0C2W7 299 aaPredicted RBP11.42□□□□□ -0.58
SF3A1-206ENST00000471037 RBM5P52756 815 aaKnown RBP eCLIP11.42□□□□□ -0.58
SF3A1-206ENST00000471037 CRHR2Q13324 411 aa11.42□□□□□ -0.58
SF3A1-206ENST00000471037 TAF7LQ5H9L4 462 aa11.42□□□□□ -0.58
SF3A1-206ENST00000471037 MFSD14BQ5SR56 506 aa11.42□□□□□ -0.58
SF3A1-206ENST00000471037 OTUD7BQ6GQQ9 843 aa11.42□□□□□ -0.58
SF3A1-206ENST00000471037 ERO1AQ96HE7 468 aa11.42□□□□□ -0.58
SF3A1-206ENST00000471037 JAG2Q9Y219 1238 aa11.42□□□□□ -0.58
SF3A1-206ENST00000471037 HTTP42858 3142 aa11.42□□□□□ -0.58
SF3A1-206ENST00000471037 RBBP6Q7Z6E9 1792 aaKnown RBP11.41□□□□□ -0.58
SF3A1-206ENST00000471037 PLIN1O60240 522 aa11.41□□□□□ -0.58
SF3A1-206ENST00000471037 FAM84BQ96KN1 310 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms