RNA–Protein interactions for RNA: ENST00000470815.1

HERC3-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-208ENST00000470815 XKR5Q6UX68 686 aa6.41□□□□□ -1.38
HERC3-208ENST00000470815 KCNF1Q9H3M0 494 aa6.41□□□□□ -1.38
HERC3-208ENST00000470815 TMEM63CQ9P1W3 806 aa6.41□□□□□ -1.38
HERC3-208ENST00000470815 SALL4Q9UJQ4 1053 aa6.41□□□□□ -1.38
HERC3-208ENST00000470815 NFKBIEO00221 500 aa6.4□□□□□ -1.38
HERC3-208ENST00000470815 FKBP4Q02790 459 aaKnown RBP eCLIP6.4□□□□□ -1.38
HERC3-208ENST00000470815 KCNA1Q09470 495 aa6.4□□□□□ -1.38
HERC3-208ENST00000470815 CPSF6Q16630 551 aaKnown RBP eCLIP6.4□□□□□ -1.38
HERC3-208ENST00000470815 FDX2Q6P4F2 183 aa6.4□□□□□ -1.38
HERC3-208ENST00000470815 ZNF438Q7Z4V0 828 aa6.4□□□□□ -1.38
HERC3-208ENST00000470815 CCER1Q8TC90 406 aaPredicted RBP6.4□□□□□ -1.38
HERC3-208ENST00000470815 NUDT16Q96DE0 195 aaKnown RBP6.4□□□□□ -1.38
HERC3-208ENST00000470815 RUSC1Q9BVN2 902 aa6.4□□□□□ -1.38
HERC3-208ENST00000470815 PATL2C9JE40 543 aaKnown RBP6.39□□□□□ -1.39
HERC3-208ENST00000470815 ICMTO60725 284 aa6.39□□□□□ -1.39
HERC3-208ENST00000470815 FAM13AO94988 1023 aa6.39□□□□□ -1.39
HERC3-208ENST00000470815 ALKBH2Q6NS38 261 aa6.39□□□□□ -1.39
HERC3-208ENST00000470815 DZANK1Q9NVP4 752 aa6.39□□□□□ -1.39
HERC3-208ENST00000470815 PIM2Q9P1W9 311 aa6.39□□□□□ -1.39
HERC3-208ENST00000470815 KANSL3Q9P2N6 904 aa6.39□□□□□ -1.39
HERC3-208ENST00000470815 ADGRE2Q9UHX3 823 aa6.39□□□□□ -1.39
HERC3-208ENST00000470815 SOX13Q9UN79 622 aa6.39□□□□□ -1.39
HERC3-208ENST00000470815 PDE2AO00408 941 aaPredicted RBP6.38□□□□□ -1.39
HERC3-208ENST00000470815 PDIA4P13667 645 aaKnown RBP6.38□□□□□ -1.39
HERC3-208ENST00000470815 ARL4DP49703 201 aa6.38□□□□□ -1.39
HERC3-208ENST00000470815 NLRP12P59046 1061 aa6.38□□□□□ -1.39
HERC3-208ENST00000470815 ECM1Q16610 540 aa6.38□□□□□ -1.39
HERC3-208ENST00000470815 GIMAP7Q8NHV1 300 aa6.38□□□□□ -1.39
HERC3-208ENST00000470815 CNTN3Q9P232 1028 aa6.38□□□□□ -1.39
HERC3-208ENST00000470815 WDR64B1ANS9 1081 aa6.37□□□□□ -1.39
HERC3-208ENST00000470815 GAS2O43903 313 aaKnown RBP6.37□□□□□ -1.39
HERC3-208ENST00000470815 CES1P23141 567 aa6.37□□□□□ -1.39
HERC3-208ENST00000470815 MAP4P27816 1152 aaKnown RBP6.37□□□□□ -1.39
HERC3-208ENST00000470815 SERPINB4P48594 390 aa6.37□□□□□ -1.39
HERC3-208ENST00000470815 C19orf57Q0VDD7 668 aa6.37□□□□□ -1.39
HERC3-208ENST00000470815 NOM1Q5C9Z4 860 aaKnown RBP6.37□□□□□ -1.39
HERC3-208ENST00000470815 TMEM102Q8N9M5 508 aaPredicted RBP6.37□□□□□ -1.39
HERC3-208ENST00000470815 PMEPA1Q969W9 287 aa6.37□□□□□ -1.39
HERC3-208ENST00000470815 SUGCTQ9HAC7 445 aa6.37□□□□□ -1.39
HERC3-208ENST00000470815 MPSTP25325 297 aa6.36□□□□□ -1.39
HERC3-208ENST00000470815 EIF1AXP47813 144 aaKnown RBP6.36□□□□□ -1.39
HERC3-208ENST00000470815 ZNF211Q13398 564 aaPredicted RBP6.36□□□□□ -1.39
HERC3-208ENST00000470815 MTMR3Q13615 1198 aa6.36□□□□□ -1.39
HERC3-208ENST00000470815 MSMPQ1L6U9 139 aa6.36□□□□□ -1.39
HERC3-208ENST00000470815 SMG8Q8ND04 991 aaKnown RBP6.36□□□□□ -1.39
HERC3-208ENST00000470815 MFSD14AQ96MC6 490 aa6.36□□□□□ -1.39
HERC3-208ENST00000470815 TMPRSS13Q9BYE2 586 aa6.36□□□□□ -1.39
HERC3-208ENST00000470815 TIAF1O95411 115 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 PRNPP04156 253 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 ACPPP15309 386 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 FOSL1P15407 271 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 PCSK2P16519 638 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 MZF1P28698 734 aaPredicted RBP6.35□□□□□ -1.39
HERC3-208ENST00000470815 HOXA10P31260 410 aaPredicted RBP6.35□□□□□ -1.39
HERC3-208ENST00000470815 C1orf127Q8N9H9 656 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 SLC7A3Q8WY07 619 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 SOX17Q9H6I2 414 aaPredicted RBP6.35□□□□□ -1.39
HERC3-208ENST00000470815 ATG3Q9NT62 314 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 LEMD3Q9Y2U8 911 aa6.35□□□□□ -1.39
HERC3-208ENST00000470815 ARID1BQ8NFD5 2236 aaPredicted RBP6.34□□□□□ -1.39
HERC3-208ENST00000470815 SOWAHDA6NJG2 315 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 ABL1P00519 1130 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 ARHGAP4P98171 946 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 SGO2Q562F6 1265 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 NUTM2GQ5VZR2 741 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 ATCAYQ86WG3 371 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 BSNDQ8WZ55 320 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 METTL22Q9BUU2 404 aaPredicted RBP6.34□□□□□ -1.39
HERC3-208ENST00000470815 CHRDQ9H2X0 955 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 CYP4F12Q9HCS2 524 aa6.34□□□□□ -1.39
HERC3-208ENST00000470815 ANGEL1Q9UNK9 670 aaKnown RBP6.34□□□□□ -1.39
HERC3-208ENST00000470815 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.34□□□□□ -1.39
HERC3-208ENST00000470815 H3BRB1 525 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 FZD6O60353 706 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 EIF4EBP3O60516 100 aaPredicted RBP6.33□□□□□ -1.4
HERC3-208ENST00000470815 PDGFAP04085 211 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 F13BP05160 661 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 IKBKEQ14164 716 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 VSIG10LQ86VR7 867 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 GLYCTKQ8IVS8 523 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 HOMEZQ8IX15 550 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 ABI1Q8IZP0 508 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 EDEM1Q92611 657 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 NXPE3Q969Y0 559 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 HHIPQ96QV1 700 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 OSBPL1AQ9BXW6 950 aa6.33□□□□□ -1.4
HERC3-208ENST00000470815 TUT1Q9H6E5 874 aaKnown RBP6.33□□□□□ -1.4
HERC3-208ENST00000470815 LOC100289279A0A1B0GTE1 492 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 SOX1O00570 391 aaPredicted RBP6.32□□□□□ -1.4
HERC3-208ENST00000470815 USP5P45974 858 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 FZD5Q13467 585 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 HGSNATQ68CP4 663 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 CBLL1Q75N03 491 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 VN1R5Q7Z5H4 357 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 FBXL18Q96ME1 805 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 CITED4Q96RK1 184 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 OSMRQ99650 979 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 GGNBP2Q9H3C7 697 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 ANO2Q9NQ90 1003 aa6.32□□□□□ -1.4
HERC3-208ENST00000470815 CCDC39Q9UFE4 941 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms