RNA–Protein interactions for RNA: ENST00000470458.1

RFTN1-208, Transcript of raftlin, lipid raft linker 1, human

TSL 4

Gene RFTN1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFTN1-208	ENST00000470458	FAM84B	Q96KN1	310 aa	Predicted RBP	13.48	□□□□□ -0.25
RFTN1-208	ENST00000470458	PUS3	Q9BZE2	481 aa	Known RBP	13.48	□□□□□ -0.25
RFTN1-208	ENST00000470458	RCAN3	Q9UKA8	241 aa		13.48	□□□□□ -0.25
RFTN1-208	ENST00000470458	RASSF10	A6NK89	507 aa		13.47	□□□□□ -0.25
RFTN1-208	ENST00000470458	HIRA	P54198	1017 aa	Predicted RBP	13.47	□□□□□ -0.25
RFTN1-208	ENST00000470458	LRRC24	Q50LG9	513 aa		13.47	□□□□□ -0.25
RFTN1-208	ENST00000470458	TMEM57	Q8N5G2	664 aa		13.47	□□□□□ -0.25
RFTN1-208	ENST00000470458	VGLL2	Q8N8G2	317 aa		13.47	□□□□□ -0.25
RFTN1-208	ENST00000470458	TRPM4	Q8TD43	1214 aa		13.47	□□□□□ -0.25
RFTN1-208	ENST00000470458	DDX19B	Q9UMR2	479 aa		13.47	□□□□□ -0.25
RFTN1-208	ENST00000470458	CNTNAP1	P78357	1384 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	IRS2	Q9Y4H2	1338 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	IGSF3	O75054	1194 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	CELF2	O95319	508 aa	Known RBP	13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	TNFAIP1	Q13829	316 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	ATP2B3	Q16720	1220 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	HSP90AB4P	Q58FF6	505 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	MFSD14B	Q5SR56	506 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	USP48	Q86UV5	1035 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	KIAA0825	Q8IV33	1275 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	REM2	Q8IYK8	340 aa	Predicted RBP	13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	SERPINA10	Q9UK55	444 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	PPP2R3B	Q9Y5P8	575 aa		13.46	□□□□□ -0.25
RFTN1-208	ENST00000470458	HMMR	O75330	724 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	FGFR2	P21802	821 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	MAP2K2	P36507	400 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	GYG1	P46976	350 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	ATP8B2	P98198	1209 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	MAP2K1	Q02750	393 aa	Predicted RBP	13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	PDE3A	Q14432	1141 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	MVP	Q14764	893 aa	Known RBP	13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	SLF2	Q8IX21	1173 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	BEGAIN	Q9BUH8	593 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	DENND2A	Q9ULE3	1009 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	TLL2	Q9Y6L7	1015 aa		13.45	□□□□□ -0.26
RFTN1-208	ENST00000470458	COL1A1	P02452	1464 aa	Predicted RBP	13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	WTIP	A6NIX2	430 aa	Predicted RBP	13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	UNCX	A6NJT0	531 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	ZBTB7B	O15156	539 aa	Predicted RBP	13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	KLRK1	P26718	216 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	GORAB	Q5T7V8	394 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	ANGEL2	Q5VTE6	544 aa	Known RBP	13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	ATG9A	Q7Z3C6	839 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	ERC1	Q8IUD2	1116 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	KLHDC4	Q8TBB5	520 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	CCDC102A	Q96A19	550 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	AIDA	Q96BJ3	306 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	HOOK2	Q96ED9	719 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	SIL1	Q9H173	461 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	GGA3	Q9NZ52	723 aa		13.44	□□□□□ -0.26
RFTN1-208	ENST00000470458	MYH13	Q9UKX3	1938 aa		13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	WNT10B	O00744	389 aa		13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	TNNI2	P48788	182 aa		13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	RBM5	P52756	815 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	OS9	Q13438	667 aa	Predicted RBP	13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	SUPT20HL1	Q3ZLR7	823 aa		13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	GBA2	Q9HCG7	927 aa	Predicted RBP	13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	GPR108	Q9NPR9	543 aa		13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	TMOD2	Q9NZR1	351 aa		13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	TTF2	Q9UNY4	1162 aa	Known RBP	13.43	□□□□□ -0.26
RFTN1-208	ENST00000470458	PDS5A	Q29RF7	1337 aa	Known RBP	13.42	□□□□□ -0.26
RFTN1-208	ENST00000470458	ECM29	Q5VYK3	1845 aa		13.42	□□□□□ -0.26
RFTN1-208	ENST00000470458	CST9	Q5W186	159 aa		13.42	□□□□□ -0.26
RFTN1-208	ENST00000470458	SAPCD2	Q86UD0	394 aa		13.42	□□□□□ -0.26
RFTN1-208	ENST00000470458	SSH3	Q8TE77	659 aa		13.42	□□□□□ -0.26
RFTN1-208	ENST00000470458	TEKT1	Q969V4	418 aa		13.42	□□□□□ -0.26
RFTN1-208	ENST00000470458	ZNF408	Q9H9D4	720 aa		13.42	□□□□□ -0.26
RFTN1-208	ENST00000470458	MKRN1	Q9UHC7	482 aa	Known RBP	13.42	□□□□□ -0.26
RFTN1-208	ENST00000470458	SHTN1	A0MZ66	631 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	SNAP23	O00161	211 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	TRAF5	O00463	557 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	CA12	O43570	354 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	UQCRFS1P1	P0C7P4	283 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	BCAM	P50895	628 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	NOG	Q13253	232 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	CFAP100	Q494V2	611 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	HHIPL2	Q6UWX4	724 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	ARMC9	Q7Z3E5	817 aa		13.41	□□□□□ -0.26
RFTN1-208	ENST00000470458	WDR33	Q9C0J8	1336 aa	Known RBP	13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	SALL1	Q9NSC2	1324 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	SPDYE2B	A6NHP3	402 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	PPP1R12B	O60237	982 aa	Predicted RBP	13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	SURF6	O75683	361 aa	Known RBP	13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	SPDYE6	P0CI01	402 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	HUNK	P57058	714 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	CHAF1A	Q13111	956 aa	Predicted RBP	13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	POLA2	Q14181	598 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	NBPF9	Q3BBW0	867 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	CCDC158	Q5M9N0	1113 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	FKBP1C	Q5VVH2	108 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	CDCA5	Q96FF9	252 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	ZBED3	Q96IU2	234 aa	Predicted RBP	13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	CAPNS2	Q96L46	248 aa		13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458	NOP58	Q9Y2X3	529 aa	Known RBP	13.4	□□□□□ -0.26
RFTN1-208	ENST00000470458		A0A1B0GUL7	405 aa		13.39	□□□□□ -0.27
RFTN1-208	ENST00000470458		F8W031	263 aa	Predicted RBP	13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms