RNA–Protein interactions for RNA: ENST00000470247.1

SREBF1-209, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 5

Gene SREBF1, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-209	ENST00000470247	SEMA3E	O15041	775 aa		13.72	□□□□□ -0.21
SREBF1-209	ENST00000470247	MAP4K4	O95819	1239 aa	Predicted RBP	13.72	□□□□□ -0.21
SREBF1-209	ENST00000470247	CYP2E1	P05181	493 aa	Predicted RBP	13.72	□□□□□ -0.21
SREBF1-209	ENST00000470247	SDS	P20132	328 aa		13.72	□□□□□ -0.21
SREBF1-209	ENST00000470247	ARHGAP27	Q6ZUM4	889 aa		13.72	□□□□□ -0.21
SREBF1-209	ENST00000470247	PODN	Q7Z5L7	613 aa		13.72	□□□□□ -0.21
SREBF1-209	ENST00000470247	DENND2A	Q9ULE3	1009 aa		13.72	□□□□□ -0.21
SREBF1-209	ENST00000470247	FAM205A	Q6ZU69	1335 aa		13.71	□□□□□ -0.21
SREBF1-209	ENST00000470247	ECE2	O60344	883 aa		13.71	□□□□□ -0.21
SREBF1-209	ENST00000470247	DNAJC2	Q99543	621 aa	Known RBP	13.71	□□□□□ -0.21
SREBF1-209	ENST00000470247	PIH1D3	Q9NQM4	214 aa	Known RBP	13.71	□□□□□ -0.21
SREBF1-209	ENST00000470247	GOLIM4	O00461	696 aa		13.7	□□□□□ -0.22
SREBF1-209	ENST00000470247	TBC1D9	Q6ZT07	1266 aa		13.7	□□□□□ -0.22
SREBF1-209	ENST00000470247	PELP1	Q8IZL8	1130 aa	Known RBP	13.7	□□□□□ -0.22
SREBF1-209	ENST00000470247	LARGE2	Q8N3Y3	721 aa		13.7	□□□□□ -0.22
SREBF1-209	ENST00000470247	PAG1	Q9NWQ8	432 aa		13.7	□□□□□ -0.22
SREBF1-209	ENST00000470247	JAG2	Q9Y219	1238 aa		13.7	□□□□□ -0.22
SREBF1-209	ENST00000470247	GRIK5	Q16478	980 aa		13.69	□□□□□ -0.22
SREBF1-209	ENST00000470247	GPR162	Q16538	588 aa		13.69	□□□□□ -0.22
SREBF1-209	ENST00000470247	EVI5L	Q96CN4	794 aa		13.69	□□□□□ -0.22
SREBF1-209	ENST00000470247	SCN9A	Q15858	1988 aa		13.69	□□□□□ -0.22
SREBF1-209	ENST00000470247	SALL1	Q9NSC2	1324 aa		13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	CHGB	P05060	677 aa		13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	GTF2I	P78347	998 aa		13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	CHAF1A	Q13111	956 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	TTLL5	Q6EMB2	1281 aa		13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	CERS5	Q8N5B7	392 aa		13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	KBTBD3	Q8NAB2	608 aa		13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	WDR66	Q8TBY9	1149 aa		13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	ZNRF3	Q9ULT6	936 aa		13.68	□□□□□ -0.22
SREBF1-209	ENST00000470247	TRIM6-TRIM34	B2RNG4	842 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247		G3V3G9	751 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	FZD9	O00144	591 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	GRIN3B	O60391	1043 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	FRAT2	O75474	233 aa	Predicted RBP	13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	LMNB1	P20700	586 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	CXCL9	Q07325	125 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	DACT2	Q5SW24	774 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	DCAF8	Q5TAQ9	597 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	STRIP1	Q5VSL9	837 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	NIM1K	Q8IY84	436 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	CNTROB	Q8N137	903 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	ZNF384	Q8TF68	577 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	RILPL2	Q969X0	211 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	MXD3	Q9BW11	206 aa		13.67	□□□□□ -0.22
SREBF1-209	ENST00000470247	USP17L3	A6NCW0	530 aa		13.66	□□□□□ -0.22
SREBF1-209	ENST00000470247	USP17L4	A6NCW7	530 aa		13.66	□□□□□ -0.22
SREBF1-209	ENST00000470247	VIL1	P09327	827 aa	Known RBP	13.66	□□□□□ -0.22
SREBF1-209	ENST00000470247	PRDX5	P30044	214 aa		13.66	□□□□□ -0.22
SREBF1-209	ENST00000470247	FKBP1A	P62942	108 aa	Known RBP	13.66	□□□□□ -0.22
SREBF1-209	ENST00000470247	TTF1	Q15361	905 aa	Predicted RBP	13.66	□□□□□ -0.22
SREBF1-209	ENST00000470247	SLFNL1	Q499Z3	407 aa		13.66	□□□□□ -0.22
SREBF1-209	ENST00000470247	USP17L1	Q7RTZ2	530 aa		13.66	□□□□□ -0.22
SREBF1-209	ENST00000470247	SBF1	O95248	1867 aa		13.65	□□□□□ -0.22
SREBF1-209	ENST00000470247	PSMD14	O00487	310 aa		13.65	□□□□□ -0.22
SREBF1-209	ENST00000470247	RAD17	O75943	681 aa		13.65	□□□□□ -0.22
SREBF1-209	ENST00000470247	CHML	P26374	656 aa		13.65	□□□□□ -0.22
SREBF1-209	ENST00000470247	MFSD14B	Q5SR56	506 aa		13.65	□□□□□ -0.22
SREBF1-209	ENST00000470247	JDP2	Q8WYK2	163 aa		13.65	□□□□□ -0.22
SREBF1-209	ENST00000470247	GML	Q99445	158 aa		13.65	□□□□□ -0.22
SREBF1-209	ENST00000470247	ZNF646	O15015	1829 aa	Predicted RBP	13.64	□□□□□ -0.23
SREBF1-209	ENST00000470247	CCDC88A	Q3V6T2	1871 aa		13.64	□□□□□ -0.23
SREBF1-209	ENST00000470247	TCRBV5S4A2T	A0A5A2	114 aa		13.64	□□□□□ -0.23
SREBF1-209	ENST00000470247	C9orf131	Q5VYM1	1079 aa		13.64	□□□□□ -0.23
SREBF1-209	ENST00000470247	TICAM2	Q86XR7	235 aa		13.64	□□□□□ -0.23
SREBF1-209	ENST00000470247	TBC1D22A	Q8WUA7	517 aa		13.64	□□□□□ -0.23
SREBF1-209	ENST00000470247	FSD1	Q9BTV5	496 aa		13.64	□□□□□ -0.23
SREBF1-209	ENST00000470247	ABCF2	Q9UG63	623 aa		13.64	□□□□□ -0.23
SREBF1-209	ENST00000470247	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	UTRN	P46939	3433 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	RNF113A	O15541	343 aa	Known RBP	13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	IDH1	O75874	414 aa	Known RBP	13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	PDE6A	P16499	860 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	ADD2	P35612	726 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	C8orf34	Q49A92	452 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	CIAPIN1	Q6FI81	312 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	ERICH6	Q7L0X2	663 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	ZGPAT	Q8N5A5	531 aa	Known RBP	13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	NSUN4	Q96CB9	384 aa	Known RBP	13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	IL25	Q9H293	177 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	LRP2BP	Q9P2M1	347 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	SUGT1	Q9Y2Z0	365 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	ZNF541	Q9H0D2	1346 aa		13.63	□□□□□ -0.23
SREBF1-209	ENST00000470247	RFX7	Q2KHR2	1363 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	IGSF3	O75054	1194 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	CDC45	O75419	566 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	MECOM	Q03112	1051 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	MAP3K12	Q12852	859 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	UBE3C	Q15386	1083 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	ZMYM1	Q5SVZ6	1142 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	SLC9C2	Q5TAH2	1124 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	MAGEB6	Q8N7X4	407 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	FBXW7	Q969H0	707 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	FAM227B	Q96M60	508 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	RNF181	Q9P0P0	153 aa		13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	DICER1	Q9UPY3	1922 aa	Known RBP	13.62	□□□□□ -0.23
SREBF1-209	ENST00000470247	MYH13	Q9UKX3	1938 aa		13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247		A0A0D9SFI3	127 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms