RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 RANBP2P49792 3224 aaKnown RBP18.61■□□□□ 0.57
CXCR4-203ENST00000466288 USP2O75604 605 aaPredicted RBP18.6■□□□□ 0.57
CXCR4-203ENST00000466288 CWF19L2Q2TBE0 894 aaKnown RBP18.6■□□□□ 0.57
CXCR4-203ENST00000466288 SUPT20HL1Q3ZLR7 823 aa18.6■□□□□ 0.57
CXCR4-203ENST00000466288 NBPF12Q5TAG4 269 aaPredicted RBP18.6■□□□□ 0.57
CXCR4-203ENST00000466288 CCDC30Q5VVM6 783 aa18.6■□□□□ 0.57
CXCR4-203ENST00000466288 ZNF333Q96JL9 665 aa18.6■□□□□ 0.57
CXCR4-203ENST00000466288 MYBBP1AQ9BQG0 1328 aaKnown RBP18.6■□□□□ 0.57
CXCR4-203ENST00000466288 CLRN2A0PK11 232 aa18.59■□□□□ 0.57
CXCR4-203ENST00000466288 NEURL1BA8MQ27 555 aa18.59■□□□□ 0.57
CXCR4-203ENST00000466288 H7C1W4 665 aa18.59■□□□□ 0.57
CXCR4-203ENST00000466288 GNAI1P63096 354 aa18.59■□□□□ 0.57
CXCR4-203ENST00000466288 AOX1Q06278 1338 aa18.59■□□□□ 0.57
CXCR4-203ENST00000466288 IRS2Q9Y4H2 1338 aa18.59■□□□□ 0.57
CXCR4-203ENST00000466288 SPDYE2BA6NHP3 402 aa18.58■□□□□ 0.57
CXCR4-203ENST00000466288 SPDYE6P0CI01 402 aa18.58■□□□□ 0.57
CXCR4-203ENST00000466288 ITGA6P23229 1130 aa18.58■□□□□ 0.57
CXCR4-203ENST00000466288 CFAP100Q494V2 611 aa18.58■□□□□ 0.57
CXCR4-203ENST00000466288 PRMT6Q96LA8 375 aaPredicted RBP18.58■□□□□ 0.57
CXCR4-203ENST00000466288 TMEM106CQ9BVX2 250 aa18.58■□□□□ 0.57
CXCR4-203ENST00000466288 LAMB1P07942 1786 aa18.58■□□□□ 0.57
CXCR4-203ENST00000466288 SNAP23O00161 211 aa18.58■□□□□ 0.56
CXCR4-203ENST00000466288 IREB2P48200 963 aaKnown RBP18.58■□□□□ 0.56
CXCR4-203ENST00000466288 CHRNDQ07001 517 aa18.58■□□□□ 0.56
CXCR4-203ENST00000466288 UBE3BQ7Z3V4 1068 aa18.58■□□□□ 0.56
CXCR4-203ENST00000466288 POTEDQ86YR6 584 aa18.58■□□□□ 0.56
CXCR4-203ENST00000466288 ANKRD13AQ8IZ07 590 aa18.58■□□□□ 0.56
CXCR4-203ENST00000466288 PLA2G12BQ9BX93 195 aa18.58■□□□□ 0.56
CXCR4-203ENST00000466288 MYO1BO43795 1136 aa18.57■□□□□ 0.56
CXCR4-203ENST00000466288 NEXNQ0ZGT2 675 aa18.57■□□□□ 0.56
CXCR4-203ENST00000466288 TSPYL6Q8N831 410 aa18.57■□□□□ 0.56
CXCR4-203ENST00000466288 MS4A4AQ96JQ5 239 aa18.57■□□□□ 0.56
CXCR4-203ENST00000466288 MPHOSPH8Q99549 860 aa18.57■□□□□ 0.56
CXCR4-203ENST00000466288 SPEF2Q9C093 1822 aa18.56■□□□□ 0.56
CXCR4-203ENST00000466288 F8W031 263 aaPredicted RBP18.56■□□□□ 0.56
CXCR4-203ENST00000466288 CSF1RP07333 972 aa18.56■□□□□ 0.56
CXCR4-203ENST00000466288 KCNJ4P48050 445 aa18.56■□□□□ 0.56
CXCR4-203ENST00000466288 RASA3Q14644 834 aa18.56■□□□□ 0.56
CXCR4-203ENST00000466288 C15orf52Q6ZUT6 534 aaKnown RBP18.56■□□□□ 0.56
CXCR4-203ENST00000466288 CHMP4AQ9BY43 222 aa18.56■□□□□ 0.56
CXCR4-203ENST00000466288 VEZTQ9HBM0 779 aa18.56■□□□□ 0.56
CXCR4-203ENST00000466288 PTCH2Q9Y6C5 1203 aa18.56■□□□□ 0.56
CXCR4-203ENST00000466288 CASP7P55210 303 aa18.55■□□□□ 0.56
CXCR4-203ENST00000466288 FKBP1AP62942 108 aaKnown RBP18.55■□□□□ 0.56
CXCR4-203ENST00000466288 CALD1Q05682 793 aaKnown RBP18.55■□□□□ 0.56
CXCR4-203ENST00000466288 OPTNQ96CV9 577 aa18.55■□□□□ 0.56
CXCR4-203ENST00000466288 IL1R1P14778 569 aa18.54■□□□□ 0.56
CXCR4-203ENST00000466288 SLC9C1Q4G0N8 1177 aa18.54■□□□□ 0.56
CXCR4-203ENST00000466288 NBPF11Q86T75 865 aa18.54■□□□□ 0.56
CXCR4-203ENST00000466288 BRI3BPQ8WY22 251 aa18.54■□□□□ 0.56
CXCR4-203ENST00000466288 OTUD5Q96G74 571 aa18.54■□□□□ 0.56
CXCR4-203ENST00000466288 ELP3Q9H9T3 547 aa18.54■□□□□ 0.56
CXCR4-203ENST00000466288 APAF1O14727 1248 aa18.53■□□□□ 0.56
CXCR4-203ENST00000466288 TAF5LO75529 589 aa18.53■□□□□ 0.56
CXCR4-203ENST00000466288 GCKRQ14397 625 aa18.53■□□□□ 0.56
CXCR4-203ENST00000466288 MYH3P11055 1940 aa18.53■□□□□ 0.56
CXCR4-203ENST00000466288 H0YGN5 161 aa18.52■□□□□ 0.56
CXCR4-203ENST00000466288 SLC4A8Q2Y0W8 1093 aa18.52■□□□□ 0.56
CXCR4-203ENST00000466288 G2E3Q7L622 706 aa18.52■□□□□ 0.56
CXCR4-203ENST00000466288 CNKSR2Q8WXI2 1034 aa18.52■□□□□ 0.56
CXCR4-203ENST00000466288 A0A0C4DFX4 3053 aa18.52■□□□□ 0.56
CXCR4-203ENST00000466288 ARHGEF6Q15052 776 aa18.52■□□□□ 0.55
CXCR4-203ENST00000466288 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.52■□□□□ 0.55
CXCR4-203ENST00000466288 HELBQ8NG08 1087 aaPredicted RBP18.52■□□□□ 0.55
CXCR4-203ENST00000466288 ZFYVE28Q9HCC9 887 aa18.52■□□□□ 0.55
CXCR4-203ENST00000466288 JAG2Q9Y219 1238 aa18.52■□□□□ 0.55
CXCR4-203ENST00000466288 TAF1CQ15572 869 aaPredicted RBP18.51■□□□□ 0.55
CXCR4-203ENST00000466288 CDAN1Q8IWY9 1227 aa18.51■□□□□ 0.55
CXCR4-203ENST00000466288 TEPSINQ96N21 525 aa18.51■□□□□ 0.55
CXCR4-203ENST00000466288 CCL15-CCL14A0A0B4J2E2 113 aa18.5■□□□□ 0.55
CXCR4-203ENST00000466288 ANKRD18BA2A2Z9 1011 aa18.5■□□□□ 0.55
CXCR4-203ENST00000466288 RBM5P52756 815 aaKnown RBP eCLIP18.5■□□□□ 0.55
CXCR4-203ENST00000466288 CCL15Q16663 113 aa18.5■□□□□ 0.55
CXCR4-203ENST00000466288 SPDYE2Q495Y8 402 aa18.5■□□□□ 0.55
CXCR4-203ENST00000466288 ZNF804AQ7Z570 1209 aa18.5■□□□□ 0.55
CXCR4-203ENST00000466288 FAM43AQ8N2R8 423 aa18.5■□□□□ 0.55
CXCR4-203ENST00000466288 STK31Q9BXU1 1019 aa18.5■□□□□ 0.55
CXCR4-203ENST00000466288 COL6A3P12111 3177 aa18.5■□□□□ 0.55
CXCR4-203ENST00000466288 MYCP01106 439 aaPredicted RBP18.49■□□□□ 0.55
CXCR4-203ENST00000466288 GTF2A2P52657 109 aa18.49■□□□□ 0.55
CXCR4-203ENST00000466288 TNFAIP1Q13829 316 aa18.49■□□□□ 0.55
CXCR4-203ENST00000466288 SH3TC2Q8TF17 1288 aa18.49■□□□□ 0.55
CXCR4-203ENST00000466288 ZNF70Q9UC06 446 aaPredicted RBP18.49■□□□□ 0.55
CXCR4-203ENST00000466288 ECM29Q5VYK3 1845 aa18.49■□□□□ 0.55
CXCR4-203ENST00000466288 VGLL4Q14135 290 aa18.48■□□□□ 0.55
CXCR4-203ENST00000466288 TRIOBPQ9H2D6 2365 aa18.48■□□□□ 0.55
CXCR4-203ENST00000466288 SLC4A2P04920 1241 aa18.47■□□□□ 0.55
CXCR4-203ENST00000466288 MAP3K9P80192 1104 aa18.47■□□□□ 0.55
CXCR4-203ENST00000466288 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.47■□□□□ 0.55
CXCR4-203ENST00000466288 ARHGAP39Q9C0H5 1083 aa18.47■□□□□ 0.55
CXCR4-203ENST00000466288 TDRD3Q9H7E2 651 aaKnown RBP18.47■□□□□ 0.55
CXCR4-203ENST00000466288 LAMA3Q16787 3333 aa18.47■□□□□ 0.55
CXCR4-203ENST00000466288 FAM205AQ6ZU69 1335 aa18.47■□□□□ 0.55
CXCR4-203ENST00000466288 CHRDL2Q6WN34 429 aa18.46■□□□□ 0.55
CXCR4-203ENST00000466288 TSR2Q969E8 191 aaKnown RBP18.46■□□□□ 0.55
CXCR4-203ENST00000466288 MYH16Q9H6N6 1097 aa18.46■□□□□ 0.55
CXCR4-203ENST00000466288 SERPINA10Q9UK55 444 aa18.46■□□□□ 0.55
CXCR4-203ENST00000466288 CEP290O15078 2479 aa18.46■□□□□ 0.55
CXCR4-203ENST00000466288 TLR2O60603 784 aa18.46■□□□□ 0.54
CXCR4-203ENST00000466288 LACTBP83111 547 aaPredicted RBP18.46■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms