RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 GPR108Q9NPR9 543 aa14.67□□□□□ -0.06
VPS52-213ENST00000461743 DOCK2Q92608 1830 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 SEMA3EO15041 775 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 POTEIP0CG38 1075 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 POTEJP0CG39 1038 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 KIF4BQ2VIQ3 1234 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 HSP90AB4PQ58FF6 505 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 ERC1Q8IUD2 1116 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 OGFOD1Q8N543 542 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 GNL3LQ9NVN8 582 aaKnown RBP14.66□□□□□ -0.06
VPS52-213ENST00000461743 PGAP2Q9UHJ9 254 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 HDAC9Q9UKV0 1011 aa14.66□□□□□ -0.06
VPS52-213ENST00000461743 PDS5AQ29RF7 1337 aaKnown RBP14.66□□□□□ -0.06
VPS52-213ENST00000461743 COL1A1P02452 1464 aaPredicted RBP14.65□□□□□ -0.06
VPS52-213ENST00000461743 APLP1P51693 650 aa14.65□□□□□ -0.06
VPS52-213ENST00000461743 TRPM4Q8TD43 1214 aa14.65□□□□□ -0.06
VPS52-213ENST00000461743 MYOZ2Q9NPC6 264 aa14.65□□□□□ -0.06
VPS52-213ENST00000461743 CLEC11AQ9Y240 323 aa14.65□□□□□ -0.06
VPS52-213ENST00000461743 PASKQ96RG2 1323 aa14.65□□□□□ -0.06
VPS52-213ENST00000461743 PITPNM2Q9BZ72 1349 aa14.65□□□□□ -0.06
VPS52-213ENST00000461743 MYO5AQ9Y4I1 1855 aaKnown RBP14.64□□□□□ -0.07
VPS52-213ENST00000461743 A0A1B0GUL7 405 aa14.64□□□□□ -0.07
VPS52-213ENST00000461743 SURF6O75683 361 aaKnown RBP14.64□□□□□ -0.07
VPS52-213ENST00000461743 TFCP2Q12800 502 aa14.64□□□□□ -0.07
VPS52-213ENST00000461743 OS9Q13438 667 aaPredicted RBP14.64□□□□□ -0.07
VPS52-213ENST00000461743 AAMPQ13685 434 aa14.64□□□□□ -0.07
VPS52-213ENST00000461743 SUGT1Q9Y2Z0 365 aa14.64□□□□□ -0.07
VPS52-213ENST00000461743 MYH7P12883 1935 aa14.64□□□□□ -0.07
VPS52-213ENST00000461743 SHTN1A0MZ66 631 aa14.63□□□□□ -0.07
VPS52-213ENST00000461743 FRAT2O75474 233 aaPredicted RBP14.63□□□□□ -0.07
VPS52-213ENST00000461743 BCAMP50895 628 aa14.63□□□□□ -0.07
VPS52-213ENST00000461743 MFSD14BQ5SR56 506 aa14.63□□□□□ -0.07
VPS52-213ENST00000461743 MTMR14Q8NCE2 650 aa14.63□□□□□ -0.07
VPS52-213ENST00000461743 MAST3O60307 1309 aa14.63□□□□□ -0.07
VPS52-213ENST00000461743 ITGBL1O95965 494 aaPredicted RBP14.62□□□□□ -0.07
VPS52-213ENST00000461743 HIRAP54198 1017 aaPredicted RBP14.62□□□□□ -0.07
VPS52-213ENST00000461743 TBC1D10BQ4KMP7 808 aaPredicted RBP14.62□□□□□ -0.07
VPS52-213ENST00000461743 SAMD7Q7Z3H4 446 aa14.62□□□□□ -0.07
VPS52-213ENST00000461743 CNTROBQ8N137 903 aa14.62□□□□□ -0.07
VPS52-213ENST00000461743 CERS5Q8N5B7 392 aa14.62□□□□□ -0.07
VPS52-213ENST00000461743 WDR66Q8TBY9 1149 aa14.62□□□□□ -0.07
VPS52-213ENST00000461743 DENND2AQ9ULE3 1009 aa14.62□□□□□ -0.07
VPS52-213ENST00000461743 SALL1Q9NSC2 1324 aa14.62□□□□□ -0.07
VPS52-213ENST00000461743 PAPPA2Q9BXP8 1791 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 TNNI3KQ59H18 835 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 MAP1SQ66K74 1059 aaPredicted RBP14.61□□□□□ -0.07
VPS52-213ENST00000461743 CCDC102BQ68D86 513 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 KIAA0825Q8IV33 1275 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 ZGPATQ8N5A5 531 aaKnown RBP14.61□□□□□ -0.07
VPS52-213ENST00000461743 XAGE2Q96GT9 111 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 MXD3Q9BW11 206 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 SERPINA10Q9UK55 444 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 FPGT-TNNI3KV9GXZ4 949 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 THSD7BQ9C0I4 1608 aa14.61□□□□□ -0.07
VPS52-213ENST00000461743 FOCADQ5VW36 1801 aa14.6□□□□□ -0.07
VPS52-213ENST00000461743 EGFRP00533 1210 aa14.6□□□□□ -0.07
VPS52-213ENST00000461743 ARID4AP29374 1257 aaPredicted RBP14.6□□□□□ -0.07
VPS52-213ENST00000461743 ADORA1P30542 326 aa14.6□□□□□ -0.07
VPS52-213ENST00000461743 PHKA1P46020 1223 aa14.6□□□□□ -0.07
VPS52-213ENST00000461743 HDLBPQ00341 1268 aaKnown RBP14.6□□□□□ -0.07
VPS52-213ENST00000461743 CDC37L1Q7L3B6 337 aa14.6□□□□□ -0.07
VPS52-213ENST00000461743 ZBED3Q96IU2 234 aaPredicted RBP14.6□□□□□ -0.07
VPS52-213ENST00000461743 GGA3Q9NZ52 723 aa14.6□□□□□ -0.07
VPS52-213ENST00000461743 CDK5RAP2Q96SN8 1893 aa14.59□□□□□ -0.07
VPS52-213ENST00000461743 RAB11FIP3O75154 756 aa14.59□□□□□ -0.07
VPS52-213ENST00000461743 CHAF1AQ13111 956 aaPredicted RBP14.59□□□□□ -0.07
VPS52-213ENST00000461743 SIRT2Q8IXJ6 389 aa14.59□□□□□ -0.07
VPS52-213ENST00000461743 DCPSQ96C86 337 aaKnown RBP14.59□□□□□ -0.07
VPS52-213ENST00000461743 KIF1BPQ96EK5 621 aa14.59□□□□□ -0.07
VPS52-213ENST00000461743 CREBZFQ9NS37 354 aa14.59□□□□□ -0.07
VPS52-213ENST00000461743 IQSEC3Q9UPP2 1182 aaPredicted RBP14.59□□□□□ -0.07
VPS52-213ENST00000461743 LAMB1P07942 1786 aa14.59□□□□□ -0.07
VPS52-213ENST00000461743 WNT10BO00744 389 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 IGSF3O75054 1194 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 UQCRFS1P1P0C7P4 283 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 TIMM10P62072 90 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 SCARF1Q14162 830 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 DLGAP5Q15398 846 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 GORABQ5T7V8 394 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 APOBEC3FQ8IUX4 373 aaKnown RBP14.58□□□□□ -0.08
VPS52-213ENST00000461743 SULF1Q8IWU6 871 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 ZNF512BQ96KM6 892 aaPredicted RBP14.58□□□□□ -0.08
VPS52-213ENST00000461743 NEUROD6Q96NK8 337 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 MRIQ9BWK5 157 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 TTF2Q9UNY4 1162 aaKnown RBP14.58□□□□□ -0.08
VPS52-213ENST00000461743 JAG2Q9Y219 1238 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 EXOC6BQ9Y2D4 811 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 GTF3C3Q9Y5Q9 886 aa14.58□□□□□ -0.08
VPS52-213ENST00000461743 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.58□□□□□ -0.08
VPS52-213ENST00000461743 SPDYE2BA6NHP3 402 aa14.57□□□□□ -0.08
VPS52-213ENST00000461743 TMEM88BA6NKF7 163 aa14.57□□□□□ -0.08
VPS52-213ENST00000461743 MYO1BO43795 1136 aa14.57□□□□□ -0.08
VPS52-213ENST00000461743 SPDYE6P0CI01 402 aa14.57□□□□□ -0.08
VPS52-213ENST00000461743 RASGRF1Q13972 1273 aa14.57□□□□□ -0.08
VPS52-213ENST00000461743 CFAP100Q494V2 611 aa14.57□□□□□ -0.08
VPS52-213ENST00000461743 RBM26Q5T8P6 1007 aaKnown RBP14.57□□□□□ -0.08
VPS52-213ENST00000461743 KRT26Q7Z3Y9 468 aa14.57□□□□□ -0.08
VPS52-213ENST00000461743 RHPN1Q8TCX5 695 aa14.57□□□□□ -0.08
VPS52-213ENST00000461743 AK9Q5TCS8 1911 aa14.56□□□□□ -0.08
VPS52-213ENST00000461743 CCDC158Q5M9N0 1113 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 241.5 ms