RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 IFNL1Q8IU54 200 aa15.69■□□□□ 0.1
HDAC4-207ENST00000461113 ERO1AQ96HE7 468 aa15.69■□□□□ 0.1
HDAC4-207ENST00000461113 UFL1O94874 794 aa15.68■□□□□ 0.1
HDAC4-207ENST00000461113 UBTFL1P0CB47 393 aaPredicted RBP15.68■□□□□ 0.1
HDAC4-207ENST00000461113 CTSWP56202 376 aa15.68■□□□□ 0.1
HDAC4-207ENST00000461113 CDC5LQ99459 802 aaKnown RBP15.68■□□□□ 0.1
HDAC4-207ENST00000461113 PLA2G12BQ9BX93 195 aa15.68■□□□□ 0.1
HDAC4-207ENST00000461113 CHMP4BQ9H444 224 aaKnown RBP15.68■□□□□ 0.1
HDAC4-207ENST00000461113 EFCC1Q9HA90 598 aa15.68■□□□□ 0.1
HDAC4-207ENST00000461113 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.68■□□□□ 0.1
HDAC4-207ENST00000461113 CHMP3Q9Y3E7 222 aa15.68■□□□□ 0.1
HDAC4-207ENST00000461113 LRRC37AA6NMS7 1700 aa15.68■□□□□ 0.1
HDAC4-207ENST00000461113 ZNF609O15014 1411 aa15.68■□□□□ 0.1
HDAC4-207ENST00000461113 ANKRD36CQ5JPF3 1778 aa15.67■□□□□ 0.1
HDAC4-207ENST00000461113 MANSC4A6NHS7 340 aaPredicted RBP15.67■□□□□ 0.1
HDAC4-207ENST00000461113 GNAI3P08754 354 aa15.67■□□□□ 0.1
HDAC4-207ENST00000461113 INHBEP58166 350 aa15.67■□□□□ 0.1
HDAC4-207ENST00000461113 RPS8P62241 208 aaKnown RBP15.67■□□□□ 0.1
HDAC4-207ENST00000461113 PODXL2Q9NZ53 605 aa15.67■□□□□ 0.1
HDAC4-207ENST00000461113 LAMB2P55268 1798 aa15.67■□□□□ 0.1
HDAC4-207ENST00000461113 IGF2BP3O00425 579 aaKnown RBP eCLIP15.66■□□□□ 0.1
HDAC4-207ENST00000461113 TAF7LQ5H9L4 462 aa15.66■□□□□ 0.1
HDAC4-207ENST00000461113 LDLRAD1Q5T700 205 aa15.66■□□□□ 0.1
HDAC4-207ENST00000461113 ITPRIPQ8IWB1 547 aa15.66■□□□□ 0.1
HDAC4-207ENST00000461113 ZNF333Q96JL9 665 aa15.66■□□□□ 0.1
HDAC4-207ENST00000461113 ANKIB1Q9P2G1 1089 aa15.66■□□□□ 0.1
HDAC4-207ENST00000461113 RBM27Q9P2N5 1060 aaKnown RBP15.66■□□□□ 0.1
HDAC4-207ENST00000461113 GGA1Q9UJY5 639 aa15.66■□□□□ 0.1
HDAC4-207ENST00000461113 TRIOBPQ9H2D6 2365 aa15.66■□□□□ 0.1
HDAC4-207ENST00000461113 BRCA2P51587 3418 aa15.66■□□□□ 0.1
HDAC4-207ENST00000461113 TAF1P21675 1872 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 CENPFP49454 3210 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 COL4A1P02462 1669 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 USP17L3A6NCW0 530 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 USP17L4A6NCW7 530 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 CASP7P55210 303 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 CCDC57Q2TAC2 916 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 USP17L1Q7RTZ2 530 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 ANKRD18AQ8IVF6 992 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 TTLL11Q8NHH1 800 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 SLC10A4Q96EP9 437 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 CCDC85AQ96PX6 553 aaPredicted RBP15.65■□□□□ 0.1
HDAC4-207ENST00000461113 USP44Q9H0E7 712 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 ANGEL1Q9UNK9 670 aaKnown RBP15.65■□□□□ 0.1
HDAC4-207ENST00000461113 FZD1Q9UP38 647 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 UTYO14607 1347 aa15.65■□□□□ 0.1
HDAC4-207ENST00000461113 ANKRD18BA2A2Z9 1011 aa15.64■□□□□ 0.09
HDAC4-207ENST00000461113 NBPF7P0C2Y1 421 aaPredicted RBP15.64■□□□□ 0.09
HDAC4-207ENST00000461113 IGHMBP2P38935 993 aaKnown RBP15.64■□□□□ 0.09
HDAC4-207ENST00000461113 CAP1Q01518 475 aa15.64■□□□□ 0.09
HDAC4-207ENST00000461113 IFIT5Q13325 482 aaKnown RBP15.64■□□□□ 0.09
HDAC4-207ENST00000461113 SLC4A8Q2Y0W8 1093 aa15.64■□□□□ 0.09
HDAC4-207ENST00000461113 TMEM57Q8N5G2 664 aa15.64■□□□□ 0.09
HDAC4-207ENST00000461113 KIAA0100Q14667 2235 aaKnown RBP15.63■□□□□ 0.09
HDAC4-207ENST00000461113 WNT10BO00744 389 aa15.63■□□□□ 0.09
HDAC4-207ENST00000461113 MYCP01106 439 aaPredicted RBP15.63■□□□□ 0.09
HDAC4-207ENST00000461113 CRHR2Q13324 411 aa15.63■□□□□ 0.09
HDAC4-207ENST00000461113 LMBR1LQ6UX01 489 aa15.63■□□□□ 0.09
HDAC4-207ENST00000461113 MPHOSPH8Q99549 860 aa15.63■□□□□ 0.09
HDAC4-207ENST00000461113 MXD3Q9BW11 206 aa15.63■□□□□ 0.09
HDAC4-207ENST00000461113 SCN9AQ15858 1988 aa15.63■□□□□ 0.09
HDAC4-207ENST00000461113 SASH1O94885 1247 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 CSF1RP07333 972 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 SP3Q02447 781 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 PDE3AQ14432 1141 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 SLC9C1Q4G0N8 1177 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 NBPF11Q86T75 865 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 SUCLG2Q96I99 432 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 CLMNQ96JQ2 1002 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 GREM2Q9H772 168 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 SEC31BQ9NQW1 1179 aa15.62■□□□□ 0.09
HDAC4-207ENST00000461113 DDX60Q8IY21 1712 aaKnown RBP15.62■□□□□ 0.09
HDAC4-207ENST00000461113 PLIN1O60240 522 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 GNAI2P04899 355 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 ZBTB48P10074 688 aaPredicted RBP15.61■□□□□ 0.09
HDAC4-207ENST00000461113 ITGA6P23229 1130 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 FOXO4P98177 505 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 PODNQ7Z5L7 613 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 OGFOD1Q8N543 542 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 WNK4Q96J92 1243 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 DDX19BQ9UMR2 479 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 PTCH2Q9Y6C5 1203 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 RBBP6Q7Z6E9 1792 aaKnown RBP15.61■□□□□ 0.09
HDAC4-207ENST00000461113 A0A0C4DFX4 3053 aa15.61■□□□□ 0.09
HDAC4-207ENST00000461113 OTUD7BQ6GQQ9 843 aa15.6■□□□□ 0.09
HDAC4-207ENST00000461113 PANK1Q8TE04 598 aa15.6■□□□□ 0.09
HDAC4-207ENST00000461113 DPF3Q92784 378 aa15.6■□□□□ 0.09
HDAC4-207ENST00000461113 FBXW7Q969H0 707 aa15.6■□□□□ 0.09
HDAC4-207ENST00000461113 MEIS3Q99687 375 aa15.6■□□□□ 0.09
HDAC4-207ENST00000461113 BICC1Q9H694 974 aaKnown RBP15.6■□□□□ 0.09
HDAC4-207ENST00000461113 TNNQ9UQP3 1299 aa15.6■□□□□ 0.09
HDAC4-207ENST00000461113 DACT2Q5SW24 774 aa15.59■□□□□ 0.09
HDAC4-207ENST00000461113 APOBEC3FQ8IUX4 373 aaKnown RBP15.59■□□□□ 0.09
HDAC4-207ENST00000461113 LRRFIP2Q9Y608 721 aaKnown RBP15.59■□□□□ 0.09
HDAC4-207ENST00000461113 CEP290O15078 2479 aa15.58■□□□□ 0.09
HDAC4-207ENST00000461113 WTIPA6NIX2 430 aaPredicted RBP15.58■□□□□ 0.08
HDAC4-207ENST00000461113 RRP1P56182 461 aaKnown RBP15.58■□□□□ 0.08
HDAC4-207ENST00000461113 MVPQ14764 893 aaKnown RBP15.58■□□□□ 0.08
HDAC4-207ENST00000461113 EPHA10Q5JZY3 1008 aa15.58■□□□□ 0.08
HDAC4-207ENST00000461113 PTPN18Q99952 460 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms