RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 MMP14P50281 582 aa21.39■■□□□ 1.01
SF3B4-202ENST00000457312 FAM109BQ6ICB4 259 aaPredicted RBP21.39■■□□□ 1.01
SF3B4-202ENST00000457312 C7orf61Q8IZ16 206 aa21.39■■□□□ 1.01
SF3B4-202ENST00000457312 FAM89AQ96GI7 184 aa21.39■■□□□ 1.01
SF3B4-202ENST00000457312 TRIM47Q96LD4 638 aa21.39■■□□□ 1.01
SF3B4-202ENST00000457312 CDH23Q9H251 3354 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 ZNF804BA4D1E1 1349 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 XDHP47989 1333 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 POTEB2H3BUK9 544 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 OSBPP22059 807 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 UBXN2AP68543 259 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 NBPF12Q5TAG4 269 aaPredicted RBP21.38■■□□□ 1.01
SF3B4-202ENST00000457312 STRIP1Q5VSL9 837 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 FBXW7Q969H0 707 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 SEC31BQ9NQW1 1179 aa21.38■■□□□ 1.01
SF3B4-202ENST00000457312 MED23Q9ULK4 1368 aa21.37■■□□□ 1.01
SF3B4-202ENST00000457312 GTF2A2P52657 109 aa21.37■■□□□ 1.01
SF3B4-202ENST00000457312 SUPT20HL1Q3ZLR7 823 aa21.37■■□□□ 1.01
SF3B4-202ENST00000457312 SYMPKQ92797 1274 aaKnown RBP21.37■■□□□ 1.01
SF3B4-202ENST00000457312 SPEF2Q9C093 1822 aa21.36■■□□□ 1.01
SF3B4-202ENST00000457312 MYPNQ86TC9 1320 aa21.36■■□□□ 1.01
SF3B4-202ENST00000457312 COPS6Q7L5N1 327 aa21.36■■□□□ 1.01
SF3B4-202ENST00000457312 KIAA0825Q8IV33 1275 aa21.36■■□□□ 1.01
SF3B4-202ENST00000457312 FAM161BQ96MY7 647 aa21.36■■□□□ 1.01
SF3B4-202ENST00000457312 BIN2Q9UBW5 565 aaPredicted RBP21.36■■□□□ 1.01
SF3B4-202ENST00000457312 PSMC4P43686 418 aa21.35■■□□□ 1.01
SF3B4-202ENST00000457312 MAFAQ8NHW3 353 aaPredicted RBP21.35■■□□□ 1.01
SF3B4-202ENST00000457312 XAGE3Q8WTP9 111 aa21.35■■□□□ 1.01
SF3B4-202ENST00000457312 PIEZO1Q92508 2521 aa21.34■■□□□ 1.01
SF3B4-202ENST00000457312 SYN1P17600 705 aa21.34■■□□□ 1.01
SF3B4-202ENST00000457312 ATP2B4P23634 1241 aa21.34■■□□□ 1.01
SF3B4-202ENST00000457312 AIMP1Q12904 312 aaKnown RBP21.34■■□□□ 1.01
SF3B4-202ENST00000457312 CC2D1BQ5T0F9 858 aaKnown RBP21.34■■□□□ 1.01
SF3B4-202ENST00000457312 DIS3LQ8TF46 1054 aaKnown RBP21.34■■□□□ 1.01
SF3B4-202ENST00000457312 PAWRQ96IZ0 340 aaKnown RBP21.34■■□□□ 1.01
SF3B4-202ENST00000457312 UBE2OQ9C0C9 1292 aaKnown RBP21.34■■□□□ 1.01
SF3B4-202ENST00000457312 TNFRSF10AO00220 468 aa21.33■■□□□ 1.01
SF3B4-202ENST00000457312 WDHD1O75717 1129 aaPredicted RBP21.33■■□□□ 1.01
SF3B4-202ENST00000457312 ZCCHC17Q9NP64 241 aaKnown RBP21.33■■□□□ 1.01
SF3B4-202ENST00000457312 EIF2S2P20042 333 aaKnown RBP21.32■■□□□ 1
SF3B4-202ENST00000457312 HOXD10P28358 340 aa21.32■■□□□ 1
SF3B4-202ENST00000457312 RTL5Q5HYW3 569 aaPredicted RBP21.32■■□□□ 1
SF3B4-202ENST00000457312 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.32■■□□□ 1
SF3B4-202ENST00000457312 PCDHAC2Q9Y5I4 1007 aa21.32■■□□□ 1
SF3B4-202ENST00000457312 TMEM265A0A087WTH1 108 aa21.31■■□□□ 1
SF3B4-202ENST00000457312 BTBD19C9JJ37 291 aa21.31■■□□□ 1
SF3B4-202ENST00000457312 IRS4O14654 1257 aaPredicted RBP21.31■■□□□ 1
SF3B4-202ENST00000457312 C17orf99Q6UX52 265 aa21.31■■□□□ 1
SF3B4-202ENST00000457312 SLAIN1Q8ND83 568 aa21.31■■□□□ 1
SF3B4-202ENST00000457312 DDX60LQ5H9U9 1706 aaKnown RBP21.31■■□□□ 1
SF3B4-202ENST00000457312 ARAP2Q8WZ64 1704 aa21.31■■□□□ 1
SF3B4-202ENST00000457312 CLRN2A0PK11 232 aa21.3■■□□□ 1
SF3B4-202ENST00000457312 TFRCP02786 760 aaKnown RBP21.3■■□□□ 1
SF3B4-202ENST00000457312 PRKCZQ05513 592 aa21.3■■□□□ 1
SF3B4-202ENST00000457312 VGLL4Q14135 290 aa21.3■■□□□ 1
SF3B4-202ENST00000457312 DLGAP5Q15398 846 aa21.3■■□□□ 1
SF3B4-202ENST00000457312 ISCA1Q9BUE6 129 aa21.3■■□□□ 1
SF3B4-202ENST00000457312 AOX1Q06278 1338 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 FAM205AQ6ZU69 1335 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 ADGRA2Q96PE1 1338 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 CAPN2P17655 700 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 NECAB2Q7Z6G3 386 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 MTMR14Q8NCE2 650 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 HELBQ8NG08 1087 aaPredicted RBP21.29■■□□□ 1
SF3B4-202ENST00000457312 DEFB118Q96PH6 123 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 CRISPLD2Q9H0B8 497 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 CPA4Q9UI42 421 aa21.29■■□□□ 1
SF3B4-202ENST00000457312 FMNL1O95466 1100 aaPredicted RBP21.28■■□□□ 1
SF3B4-202ENST00000457312 CDX2Q99626 313 aaPredicted RBP21.28■■□□□ 1
SF3B4-202ENST00000457312 COA1Q9GZY4 146 aa21.28■■□□□ 1
SF3B4-202ENST00000457312 HSPA5P11021 654 aaKnown RBP21.27■■□□□ 1
SF3B4-202ENST00000457312 VEZTQ9HBM0 779 aa21.27■■□□□ 1
SF3B4-202ENST00000457312 PAK6Q9NQU5 681 aaPredicted RBP21.27■■□□□ 1
SF3B4-202ENST00000457312 ATP5J2-PTCD1G3V325 749 aa21.26■□□□□ 0.99
SF3B4-202ENST00000457312 CETPP11597 493 aa21.26■□□□□ 0.99
SF3B4-202ENST00000457312 RASA3Q14644 834 aa21.26■□□□□ 0.99
SF3B4-202ENST00000457312 ZNF697Q5TEC3 545 aa21.26■□□□□ 0.99
SF3B4-202ENST00000457312 TTLL5Q6EMB2 1281 aa21.26■□□□□ 0.99
SF3B4-202ENST00000457312 INHAP05111 366 aa21.25■□□□□ 0.99
SF3B4-202ENST00000457312 U2AF1L5P0DN76 240 aaPredicted RBP21.25■□□□□ 0.99
SF3B4-202ENST00000457312 U2AF1Q01081 240 aaKnown RBP eCLIP21.25■□□□□ 0.99
SF3B4-202ENST00000457312 MAP3K12Q12852 859 aa21.25■□□□□ 0.99
SF3B4-202ENST00000457312 TXNRD3Q86VQ6 643 aa21.25■□□□□ 0.99
SF3B4-202ENST00000457312 SPDYE2BA6NHP3 402 aa21.24■□□□□ 0.99
SF3B4-202ENST00000457312 SPDYE5A6NIY4 337 aa21.24■□□□□ 0.99
SF3B4-202ENST00000457312 SPDYE6P0CI01 402 aa21.24■□□□□ 0.99
SF3B4-202ENST00000457312 CDAN1Q8IWY9 1227 aa21.24■□□□□ 0.99
SF3B4-202ENST00000457312 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.24■□□□□ 0.99
SF3B4-202ENST00000457312 GABRQQ9UN88 632 aa21.24■□□□□ 0.99
SF3B4-202ENST00000457312 SYNGAP1Q96PV0 1343 aa21.24■□□□□ 0.99
SF3B4-202ENST00000457312 PER1O15534 1290 aaPredicted RBP21.23■□□□□ 0.99
SF3B4-202ENST00000457312 MYO1BO43795 1136 aa21.23■□□□□ 0.99
SF3B4-202ENST00000457312 TJAP1Q5JTD0 557 aa21.23■□□□□ 0.99
SF3B4-202ENST00000457312 BDP1A6H8Y1 2624 aa21.23■□□□□ 0.99
SF3B4-202ENST00000457312 DOCK3Q8IZD9 2030 aa21.22■□□□□ 0.99
SF3B4-202ENST00000457312 ELNP15502 786 aa21.22■□□□□ 0.99
SF3B4-202ENST00000457312 GTF2IP78347 998 aa21.22■□□□□ 0.99
SF3B4-202ENST00000457312 ANKRD18AQ8IVF6 992 aa21.22■□□□□ 0.99
SF3B4-202ENST00000457312 CERS5Q8N5B7 392 aa21.22■□□□□ 0.99
SF3B4-202ENST00000457312 ADCY3O60266 1144 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms